Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C15
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   2.2  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    27   2.2  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   3.8  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    26   3.8  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   6.6  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.8  

>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 300 QEFRSNDYGAVSEPGTDIVLVGDDLSLYWTNPNRMNAG 187
           Q+  SND+   S+   D  L+G++  L W NP+  N G
Sbjct: 140 QDAYSNDHDIQSK---DTELLGNEYCLEWKNPHLTNVG 174


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = -3

Query: 468 MDLNAELVINDDFV---PAPDKSELMYIFSFVPHQELYWSL--PVFPGNRILSYGGFLYL 304
           +D + E++I D F+   PA  KS ++ +   + H    + L   + P N ++S  G L L
Sbjct: 90  LDSDLEMLIKDKFIVFQPAHIKSWMVMLLRGLHHIHSRFILHRDLKPNNLLISSDGVLKL 149

Query: 303 RQEFRSNDYGAVSEPGTDIV 244
                S D+G  S     ++
Sbjct: 150 ADFGLSRDFGTPSHMSHQVI 169


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 147 KHVHGVVLGRSKTSQRSCG-*GLSNTRKDHRQLKQYLFLVQKP 272
           +++HG+ LG+ K SQ +    G   T++  R++ +Y F+   P
Sbjct: 413 EYLHGIALGKQKYSQATRNHIGYLLTKQCLREISEYHFMQTDP 455


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 22/92 (23%), Positives = 39/92 (42%)
 Frame = +2

Query: 206 GFVQYKERSSPTKTISVPGSETAP*SLLRNSCLRYKNPP*DRILLPGKTGRDQYSSWCGT 385
           GFVQY E+S+  K I+         S +R +      P         +   + +      
Sbjct: 335 GFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHNTLPVSALSQSQSQVSDEGFDRTLSA 394

Query: 386 NEKIYISSLLSGAGTKSSLITSSALRSIIVNP 481
           N+   ++  + GA + SS  + S+L+S  V+P
Sbjct: 395 NQIFGMNQSVIGANSGSSNSSGSSLKSAPVSP 426


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 357 LPVFPGNRILSYGGFLYLRQEFRSNDYGAVSEPGTDIVLVGD 232
           L V  G  I S+  F Y  ++   +D   V++PG  I LVG+
Sbjct: 577 LKVTQGKVIFSHVSFAYDPRKPVLSDINFVAQPGKVIALVGE 618


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 216 WTNPNRMNAGWSLTYQVPLREHVWHILNTDTPVTRDRFLRVLS 88
           WT+ +     WS+    PL+ +VW I   + P T  R++  ++
Sbjct: 31  WTSGHIEPLEWSVVSTDPLQANVWLINEVEYPPT-SRYIMTIN 72


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
 Frame = +2

Query: 188 PAFMRLGFVQYKERSSPTKTISVPGSETAP*SLLRNSCLRYKNPP*DRILLPGKTGRDQY 367
           P  ++     Y   +S   + S+  S  A  SL  +S L   +        P  +     
Sbjct: 53  PTLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSS 112

Query: 368 SSWCGT--NEKIYISSLLSGAGTKSSLITSSALRSIIVNPPNVSPNIGAA 511
           S+   +  +     SSL S + T SSL +SS   S + +    S ++ ++
Sbjct: 113 SATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASS 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,298
Number of Sequences: 5004
Number of extensions: 59175
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)