Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C15
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0075 + 8869087-8869413,8869823-8870053,8871145-8871267,887...    32   0.42 
04_01_0146 + 1701744-1701860,1702036-1702112,1702247-1702344,170...    29   3.9  
03_01_0504 - 3792170-3792565                                           29   3.9  
11_06_0305 + 22209640-22209736,22212679-22212941,22213444-222135...    28   6.8  
11_06_0441 + 23595154-23595319,23597414-23597471,23597674-23597869     27   9.0  
03_02_0410 + 8216384-8217019                                           27   9.0  

>10_05_0075 +
           8869087-8869413,8869823-8870053,8871145-8871267,
           8871873-8872091
          Length = 299

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 502 RCCYWNSGIMGALMTVGCNAGAVATLASKWVCR 600
           RCCY   G++GA  + G +  A ++ A+ + CR
Sbjct: 45  RCCYGRRGVVGAAQSTGGHIPAGSSSAAAYACR 77


>04_01_0146 +
           1701744-1701860,1702036-1702112,1702247-1702344,
           1704073-1704228,1704671-1705290,1705397-1705458,
           1705551-1705941,1706404-1706575,1706686-1707212
          Length = 739

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 579 QRCYCSGVTSDCHEGAHYTRIPIAA-PILGDTF 484
           Q  Y  G  + C   AHY RIPIA  P++ + +
Sbjct: 704 QGSYLFGSLAWCDGAAHYVRIPIAVRPVISENY 736


>03_01_0504 - 3792170-3792565
          Length = 131

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 112 TGYRCVSVQNMPNMFTEWYLVGQRPASVHAVRVCPIQGKIIAN*NNICSWFRNRSIVVAA 291
           +G+R  +V+N+P  FT  +L G R    H  R  P + +++A  + +     N + +V A
Sbjct: 41  SGFRLHNVRNLPLQFTSTHLEGSRIRRGHR-RFLPSRREVVAAIHVLVESCWNNNPLVPA 99

Query: 292 EFLSKIQKS 318
              S ++ S
Sbjct: 100 CVASSVRPS 108


>11_06_0305 +
           22209640-22209736,22212679-22212941,22213444-22213530,
           22214866-22214937,22215729-22215793,22215918-22216050,
           22216397-22216477,22216599-22216688,22217954-22218103
          Length = 345

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 429 VPAPDKSELMYIFSFVPHQELYWSLPVFPGNRILSYGGFLYLRQEFRSNDYGAVSEP 259
           VPA   + ++  F  + H       P+ PG +    G  + +  E   ND GAV +P
Sbjct: 4   VPAVHLAVVLLAFCCLIHASSSAETPLPPGEKEFGMGDHVVVNVEGLGNDGGAVEKP 60


>11_06_0441 + 23595154-23595319,23597414-23597471,23597674-23597869
          Length = 139

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 603 ESANPLGCQRCYC-SGVTSDCHEG 535
           +S  P+GCQ C+C    T   +EG
Sbjct: 6   DSTAPIGCQSCFCDEAATPSANEG 29


>03_02_0410 + 8216384-8217019
          Length = 211

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 189 GWSLTYQVPLREHVWHILNTDTPVTR 112
           GWS  +++PL+   W  L+ D  V R
Sbjct: 72  GWSFAFELPLQREHWGRLSLDLEVER 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,974,346
Number of Sequences: 37544
Number of extensions: 394857
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)