Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C15
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   2e-06
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 42   4e-04
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)                   39   0.003
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.026
SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)                    31   0.75 
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 31   0.99 
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_27540| Best HMM Match : Laminin_EGF (HMM E-Value=5.4e-12)           29   4.0  
SB_36164| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)                   28   7.0  
SB_44288| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)                   27   9.2  

>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
 Frame = -3

Query: 612 FGLESANPLGCQRCYCSGVTSDCHEGAHYTRIPIAAPILGDTFGGFTIMDLNAEL-VIND 436
           FGL  +   GC +C+CSGVT  C E +   R  I    L     G +I DL     +IN 
Sbjct: 323 FGLSYSG--GCIKCFCSGVTDKC-ESSERNRTQIGIRFLVGQRQGISITDLTGTFSMINM 379

Query: 435 DFVPAPDKSELMYIFSFVPHQE-LYWSLPV-FPGNRILSYGGFLYLRQEFRSNDYGAVSE 262
            + P   +       +  P +  L+W LP  F GN+I SYGG L     + +   G   +
Sbjct: 380 LYNPRSYELVFQGFDASAPQRRPLFWKLPKRFLGNKIASYGGVLMFVASYVARKGGDPID 439

Query: 261 PGTDIV 244
             T I+
Sbjct: 440 SPTAII 445


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 11/195 (5%)
 Frame = -3

Query: 615  TFGLESANPLGCQRCYCSGVTSDCHEGAHYTRIPIAAPIL----GDTFGGFTIMDLNAEL 448
            ++GL + +P GC RC+CSG +++C   + YTR  + +  L         G+T    N +L
Sbjct: 934  SYGLRAGHPDGCLRCHCSGFSTNCSMASGYTRGQLISDFLLTADPTDLDGWTGRYPNGQL 993

Query: 447  VINDDFVPAPDKSELMYIFSFVPHQELYWSLPVFPGNRILSYGGFLYLRQEFRSNDYGAV 268
              N     +     L +       ++ Y+S P     + L+ G + Y      S      
Sbjct: 994  ASNLRSSISNLPGGLRFYIEASSARDFYFSAP----TKYLTRGRYAYTHAMTFSLQQDNT 1049

Query: 267  SEPGT----DIVLVGD--DLSLYWTNPNRMNAGWSLTYQVPLREHVWHILNTDTPVTRDR 106
            + P +    D+++ G   +  L  + P      ++ TY+V   E  W I NT   V  D+
Sbjct: 1050 TIPSSSTRGDVIIKGRYFNSELVTSLPTPPGLTFT-TYKVVFLESNWRIGNTSGRVATDK 1108

Query: 105  -FLRVLSNLKRVLVR 64
              +RVLS+L+ + +R
Sbjct: 1109 ELVRVLSSLEYLWIR 1123


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
 Frame = -3

Query: 615  TFGLESANPLGCQRCYCSGVTSDCHEGAHYTRIPIAAPILGDTFGGFTIMDLNAELVIND 436
            TF L+S NP GCQ C+  G   +C   + +    I +  +  +  G+T++D +   V N 
Sbjct: 824  TFHLDSGNPHGCQHCFGYGHAHNCTSASGFIATNITSNFITGS-DGWTVVDYSGIPVANV 882

Query: 435  DFVPAPDKSELMYIFSFVPHQELYWSLP-VFPGNRILSY 322
              +P       + +   V  +EL+   P  F GN++ SY
Sbjct: 883  TSLPGNG----LLVTPLVSSRELFLVAPQKFLGNQLYSY 917


>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
          Length = 1465

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -3

Query: 612 FGLESANPLGCQRCYCSGVTSDCHEGAHYT 523
           FGLE++NP GC++C+C G ++ C     YT
Sbjct: 458 FGLEASNPHGCKQCFCYGHSTVCKAAPGYT 487


>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1931

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 612 FGLESANPLGCQRCYCSGVTSDC 544
           F L++ NP GC +C+CSG++  C
Sbjct: 812 FNLDNTNPSGCTQCWCSGLSDKC 834


>SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)
          Length = 369

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 49  GGDRSTNQHPFQV-RQYS*ETVTGYRCVSVQNMPNMFTEWYLVGQRPASVHAVRVCPIQ 222
           G  ++T Q+P Q  +QY  +    Y C + Q  P   T+ Y     P+S+      P+Q
Sbjct: 24  GPCQATPQYPCQATQQYPCQATQQYPCQATQQYPCQATQQYPCASYPSSIPQYEAPPVQ 82


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 573 CYCSGVTSDCHEGAHYTRIPIAAP--ILGDTFGGFTIMDLNAELVI 442
           CYC G   +C EG H T IP+  P  I     G   I+DL+ + ++
Sbjct: 38  CYCLGNRVNC-EGKHLTAIPVGIPSDITALNLGYNNIVDLDPKQLL 82


>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1101

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 615  TFGLESANPLGCQRCYCSGVTSDCHEGAHYTRIPIAAPILGDTF 484
            T+  +  NP GC  CYC G ++ C   + + R  I    LG  F
Sbjct: 912  TYHSDPNNPDGCTPCYCFGRSNTCTSASGFVRSYIKVD-LGSPF 954


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +2

Query: 359  DQYSSWCGTNEKIYISS-LLSGAGTK---SSLITSSALRSIIVNPPNVSPNIGAAIG 517
            D+  S   T   IYI   +L  AG +    +L  ++ +R++ +NP  V+P+ G A+G
Sbjct: 919  DEVLSGNTTLTDIYIGGGILGDAGVQHIAEALKFNTTIRTLAINPRRVTPDAGQALG 975


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 612 FGLESANPLGCQRCYCS 562
           F L S+NP GCQ C C+
Sbjct: 755 FNLSSSNPEGCQACNCN 771


>SB_27540| Best HMM Match : Laminin_EGF (HMM E-Value=5.4e-12)
          Length = 674

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 612 FGLESANPLGCQRCYCS 562
           F L S+NP GCQ C C+
Sbjct: 341 FNLSSSNPEGCQACNCN 357


>SB_36164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -3

Query: 471 IMDLNAELVINDDFVPA----PDKSELMYIFSFVPHQELYWSLPVFPGNRILSYGGFLYL 304
           I    + L ++ +F+P     P ++ L     F+P +++Y    ++P  RI  Y   L L
Sbjct: 96  IYPYRSNLSLSSEFIPIERIYPYRANLSLSIEFIPIEKIYPIKRIYPIERIYPYRSDLSL 155

Query: 303 RQEF 292
             EF
Sbjct: 156 SIEF 159


>SB_46656| Best HMM Match : A2M (HMM E-Value=5.8e-39)
          Length = 319

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 109 VTGYRCVSVQNMPNMFTEWYLVGQRPASVHAVRVCP 216
           VTG + ++ Q +P+  T WY      +S H + V P
Sbjct: 98  VTGEKVITAQ-VPDTITSWYASAFAMSSTHGIGVAP 132


>SB_44288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 290 RNSCLRYKNPP*DRILLPGKTGR 358
           R SCL YK+PP      PG+ GR
Sbjct: 229 RRSCLLYKDPPPRPTQAPGQGGR 251


>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
          Length = 618

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  G*TVLVRNGHGLPVCQCSKYAKHVHGVVLGR 176
           G T ++ + + + V QC  ++ H+HG  +GR
Sbjct: 87  GETAVIESNNRISVYQCFSFSYHMHGRNMGR 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,768,199
Number of Sequences: 59808
Number of extensions: 456848
Number of successful extensions: 1171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)