Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C15
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 365 YSSWCGTNEKIYISSLLSGAGT 430
           Y S CG +EK  ++ LLS   T
Sbjct: 47  YESLCGRHEKRLLNELLSSYNT 68


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 365 YSSWCGTNEKIYISSLLSGAGT 430
           Y S CG +EK  ++ LLS   T
Sbjct: 47  YESLCGRHEKRLLNELLSSYNT 68


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 543 HEGAHYTRIPIAAPILGDTFGGFTIMDLNAELVINDDFVPAPDKSEL 403
           H+ AHY        +  +TFG    M+L+ +   +   V +P  S +
Sbjct: 250 HQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 171 GRSKTSQRSCG*GLSNTRKDHRQLK 245
           GRS+ S       LS+ R   RQLK
Sbjct: 29  GRSRVSDEQLNMALSDQRYLRRQLK 53


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 171 GRSKTSQRSCG*GLSNTRKDHRQLK 245
           GRS+ S       LS+ R   RQLK
Sbjct: 29  GRSRVSDEQLNMALSDQRYLRRQLK 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,148
Number of Sequences: 438
Number of extensions: 4320
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)