Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C15
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25730.1 68415.m03084 expressed protein                             29   1.9  
At3g59300.1 68416.m06610 expressed protein hypothetical protein ...    27   7.5  
At2g35240.1 68415.m04323 plastid developmental protein DAG, puta...    27   7.5  
At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr...    27   7.5  
At3g44990.1 68416.m04847 xyloglucan:xyloglucosyl transferase, pu...    27   10.0 

>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 531  HYTRIPIAAPILGDTFGGFTIMDLNAELV---INDDFVPAPDKSELMYIFS 388
            H  +I     +L   FGG  + + +  ++   +ND+F  +PD   L Y FS
Sbjct: 1150 HLVKISPVRAVLACVFGGSILYNGSDSIISSSLNDEFPSSPDADRLFYEFS 1200


>At3g59300.1 68416.m06610 expressed protein hypothetical protein
           T2J13.20 - Arabidopsis thaliana, PIR:T46116
          Length = 459

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   VSIDTSAMDVXQYVGGDRSTNQHPFQVR 90
           +S+D+  MDV  + G    T++ PF+ R
Sbjct: 396 ISVDSLGMDVRVFAGAQVQTHRFPFKTR 423


>At2g35240.1 68415.m04323 plastid developmental protein DAG,
           putative similar to plastid protein [Arabidopsis
           thaliana] gi|2246378|emb|CAB06698
          Length = 232

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -3

Query: 588 LGCQRCYCSGVTSDCHEGAHYTRIPIAAPILGDTFGGFTIMDLNAELVINDDFVPAPDKS 409
           + C+R +  G   D         +P    +L D++      D  AEL +N + VP P + 
Sbjct: 141 VSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFVNGEVVPRPPER 200

Query: 408 E 406
           +
Sbjct: 201 Q 201


>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
           protein
          Length = 362

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 327 SYGGFLYLRQEFRSNDYGAVSEPGT 253
           SYGGF  + Q+ +SND G  +  G+
Sbjct: 112 SYGGFNEISQQHKSNDIGGGNSSGS 136


>At3g44990.1 68416.m04847 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative
          Length = 293

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 358 RPIQFLVW-DK*KDIHQLALVWCRNKIV--VDH*FSIKVHNSKS 480
           R ++F +W D  +D H  A++W  N+IV  VD    I+ +N K+
Sbjct: 147 REMKFTLWFDPTQDFHHYAILWNPNQIVFFVDD-VPIRTYNRKN 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,474
Number of Sequences: 28952
Number of extensions: 313458
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)