Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C14
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 174 5e-45
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 91 1e-19
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 26 3.7
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 6.5
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 6.5
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.6
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 25 8.6
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 25 8.6
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 8.6
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 174 bits (424), Expect = 5e-45
Identities = 83/128 (64%), Positives = 97/128 (75%)
Frame = +2
Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
IAVATP+GLV PV+RN ESM IE A+ L KAR G L DM GTFTISNGG+FG
Sbjct: 319 IAVATPKGLVTPVIRNAESMSLLEIESAIATLGSKARAGKLAIEDMASGTFTISNGGIFG 378
Query: 296 SLLSMPIINMPQSCILGMHAIFQRPVAIKGKVEIRPMMYLALSYDHRLIDGREAVLFLRK 475
SL PIIN+PQ+ +LG+HAI +RPV I G+V RPMMYLAL+YDHR++DGREAV FLR
Sbjct: 379 SLYGTPIINLPQTAVLGLHAIKERPVVINGQVVPRPMMYLALTYDHRMVDGREAVTFLRL 438
Query: 476 VKAGVEDP 499
VK +EDP
Sbjct: 439 VKEYIEDP 446
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 90.6 bits (215), Expect = 1e-19
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +2
Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
+AVATP GL+ PV+RN ++ I ++AR L P + QGGTFTISN G+F
Sbjct: 348 MAVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNKLKPEEYQGGTFTISNLGMFP 407
Query: 296 SLLSMPIINMPQSCILG----MHAIFQRPVAIKGKVEIRPMMYLALSYDHRLIDGREAVL 463
IIN PQ+CIL + + + KG ++ P+M LS DHR++DG A
Sbjct: 408 VDQFTAIINPPQACILAVGTTVDTVVPDSTSEKG-FKVAPIMKCTLSSDHRVVDGAMAAR 466
Query: 464 FLRKVKAGVEDP 499
F +K +E+P
Sbjct: 467 FTTALKKILENP 478
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 315 IGIDNNEPNTPPLLIVNV 262
IG+D+NE N PP+ + V
Sbjct: 166 IGLDSNEENNPPIKFLKV 183
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 232 TSSSLFGERIHSQFYSRVVHRFDVTEHG 149
TS FG R H +FY VH + + E G
Sbjct: 130 TSKEFFGMRPHDKFY--FVHSYMIPEKG 155
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 113 IIAVATPRGLVVPVLRNVESMDY-PRIELAMNALAEKARTG 232
++ RG+ +P+L NV + D+ P+ ++ ++ + AR G
Sbjct: 401 VVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAG 441
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 139 SARCCHSYYFYFKVIAFCSTGSSPFLASSSRTAD 38
+AR +Y + VI FC + F+A S TA+
Sbjct: 538 NARSFFIFYLFTIVITFCMSAVFRFIALLSTTAE 571
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 320 NMPQSCILGMHAIFQRPVAIKGKVEI 397
++P+ +L +HA+F PV++ VE+
Sbjct: 324 DLPRLALLMIHAVFTSPVSLAQWVEL 349
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 413 LALSYDHRLIDGREAVLFLRKVKAGVE 493
L YDH L DG LF + V G++
Sbjct: 119 LVFIYDHSLFDGGSGPLFHKYVLEGLQ 145
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 105 LRSSPSVQRVRARFWRPPLGPPITSRRPARRS 10
+R+SP + V + P G P RPA RS
Sbjct: 56 IRNSPKIDVVNTDWSIPLCGSPRNKSRPASRS 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,820
Number of Sequences: 5004
Number of extensions: 41884
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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