Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C14
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31440| Best HMM Match : 2-oxoacid_dh (HMM E-Value=3.5e-14)         136   1e-32
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                71   4e-13
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                68   4e-12
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)                   30   1.3  
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   29   2.2  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   2.9  
SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)           29   2.9  
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)          27   6.7  

>SB_31440| Best HMM Match : 2-oxoacid_dh (HMM E-Value=3.5e-14)
          Length = 107

 Score =  136 bits (329), Expect = 1e-32
 Identities = 66/91 (72%), Positives = 75/91 (82%)
 Frame = +2

Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
           +AV+TP+GLVVPVLRNVESM++  IE A+NAL EKAR  +L   DM GGTFTISNGGVFG
Sbjct: 17  VAVSTPKGLVVPVLRNVESMNFADIEKAINALGEKARNNDLAIEDMDGGTFTISNGGVFG 76

Query: 296 SLLSMPIINMPQSCILGMHAIFQRPVAIKGK 388
           SL+  PIIN PQS ILGMHAI +RPVAI GK
Sbjct: 77  SLMGTPIINPPQSAILGMHAINERPVAINGK 107


>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 382

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 43/128 (33%), Positives = 71/128 (55%)
 Frame = +2

Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
           + VAT  G++ PV+RN   +D  +I L  + +A +AR   L   +  GG+ T+SN G+FG
Sbjct: 253 VDVATDVGIITPVIRNAAYLDLSQISLVAHDIATRARDNKLHEHEFHGGSLTLSNLGMFG 312

Query: 296 SLLSMPIINMPQSCILGMHAIFQRPVAIKGKVEIRPMMYLALSYDHRLIDGREAVLFLRK 475
                 IIN  Q+ IL + A  +  V+  G  +++ ++ + LS D R++D   A  +L  
Sbjct: 313 VTEFSAIINPLQASILAVGAT-RLSVSTDG--QLQNVITVKLSCDARVVDNELASRWLET 369

Query: 476 VKAGVEDP 499
            K G+E+P
Sbjct: 370 FKLGIENP 377


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
 Frame = +2

Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
           +A+ TP+GLVVP ++NV+      I + +  L +    G L   DM GGTF++SN G  G
Sbjct: 305 LAMDTPQGLVVPNVKNVQLKSVFEIAVELKRLHQLGLKGQLGTEDMTGGTFSLSNIGSIG 364

Query: 296 SLLSMPIINMPQSCI--LGMHAIFQRPVAIKGKVEIRPMMYLALSYDHRLIDGREAVLFL 469
              + P++  P+  I  LG   +  R     G V    +M ++ S DHR+I+G     F 
Sbjct: 365 GTYAKPVVLPPEVAIGALGKIQVLPR-FNSNGDVYKAHVMNVSWSADHRIIEGAVMCRFS 423

Query: 470 RKVKAGVEDPNS 505
              K+ +E+P S
Sbjct: 424 NLWKSYLENPAS 435


>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 26/30 (86%), Positives = 29/30 (96%)
 Frame = +2

Query: 386 KVEIRPMMYLALSYDHRLIDGREAVLFLRK 475
           +VEIRPMMY+AL+YDHRLIDGREAV FLRK
Sbjct: 315 QVEIRPMMYVALTYDHRLIDGREAVTFLRK 344


>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 34/128 (26%), Positives = 56/128 (43%)
 Frame = +2

Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
           +AV+T  GL+ P++ + +      I   + +LAEKAR G L P + Q     +  GG   
Sbjct: 297 VAVSTDNGLITPIVFDADKKGLSSISGDITSLAEKARAGKLQPQEFQACILAV--GGTEK 354

Query: 296 SLLSMPIINMPQSCILGMHAIFQRPVAIKGKVEIRPMMYLALSYDHRLIDGREAVLFLRK 475
            +L+                      + KG   +  +M + LS DHR++DG     +L  
Sbjct: 355 RVLA-------------------DETSEKG-YSVGNVMSVTLSCDHRVVDGAVGAQWLAV 394

Query: 476 VKAGVEDP 499
            K  +E+P
Sbjct: 395 FKKYLENP 402


>SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)
          Length = 769

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 112 FYFKVIAFCSTGSSPFLASSSRTADNLAP 26
           +YFKV+A+ + G  PF    S T ++ AP
Sbjct: 707 YYFKVMAYTAVGDGPFSDVVSATTNSTAP 735


>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +2

Query: 239 TPADMQGGTFTISNGGVFGSLLSMPIINMPQSCILGMHAIFQRPVAIKGKVEIR 400
           TP  +QG TFT  +      L   P      S   G    FQ P    GK ++R
Sbjct: 258 TPVTIQGSTFTFDDNAFLSLLTPPPPQASMSSPYGGSDTSFQLPNYANGKAQVR 311


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 38   IGGPRGGRQKRARTR*TEGDDLKIKIIAVATPRGLVVPVLRNVESMDYPR-IELAMNALA 214
            I G R  R++    R     D  I +      RGL +P +++V + D P  IE  ++ + 
Sbjct: 1130 IHGDRSQREREEALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIG 1189

Query: 215  EKARTGN 235
               R G+
Sbjct: 1190 RTGRVGH 1196


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +2

Query: 8   GERRAGRREVIGGPRGGRQKRARTR*TEGDDLKIKIIAVATPRGLVVPVLRNVESMDYPR 187
           GE+     +  G P G  + RA +R     D+KI      TP   V  V +  ES  YPR
Sbjct: 22  GEKPQAPGQAAGEPAGLMEMRA-SRKVGTSDMKIPDAGKGTPDYSVYAVEKQSESKKYPR 80

Query: 188 I 190
           +
Sbjct: 81  L 81


>SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)
          Length = 592

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +1

Query: 280 WRRIRLVVIYANHKHAAILHSGNARYLPTTRRYQGQGRNKTDDVSSALIRPQINRRSRGG 459
           WR ++   +    KH  +L SG+    P  + +  + R+   + + AL+R Q     RG 
Sbjct: 314 WRGLKDAPVSFEEKHQIVLLSGHPLSSPIVQDFHQRNRHVGREHTMALVR-QEYWILRGN 372

Query: 460 VVSKESQSWRGRPK 501
            + K+  S+R +PK
Sbjct: 373 FLEKKGGSFR-KPK 385


>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
          Length = 508

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 161 NVESMDYPRIELAMNALAEKARTGNLTPADMQGGTF 268
           ++ES+  PR ++        AR+  +TP DM GGT+
Sbjct: 303 HMESLKKPRFQVEDAYFGWLARSVGVTPLDMGGGTW 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,316,761
Number of Sequences: 59808
Number of extensions: 341393
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)