Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C14
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical ...   187   5e-48
Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical pr...    95   2e-20
Z81044-2|CAB02813.1|  337|Caenorhabditis elegans Hypothetical pr...    83   1e-16
Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical pr...    63   1e-10
AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical...    28   3.4  
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z75530-1|CAA99791.2|  186|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF099918-5|AAK29841.2|  391|Caenorhabditis elegans Hypothetical ...    27   7.8  
AC006676-5|AAK71383.2|  172|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical
           protein W02F12.5 protein.
          Length = 463

 Score =  187 bits (455), Expect = 5e-48
 Identities = 88/128 (68%), Positives = 102/128 (79%)
 Frame = +2

Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
           +AVATP+GLVVPVLRNVESM+Y +IEL +  L  KAR G L   DM+GGTFTISNGGVFG
Sbjct: 329 VAVATPKGLVVPVLRNVESMNYAQIELELANLGVKARDGKLAVEDMEGGTFTISNGGVFG 388

Query: 296 SLLSMPIINMPQSCILGMHAIFQRPVAIKGKVEIRPMMYLALSYDHRLIDGREAVLFLRK 475
           S+   PIIN PQS ILGMH +F R V + GK EIRP+M +AL+YDHRLIDGREAV FL+K
Sbjct: 389 SMFGTPIINPPQSAILGMHGVFDRVVPVNGKPEIRPIMQIALTYDHRLIDGREAVTFLKK 448

Query: 476 VKAGVEDP 499
           +K  VEDP
Sbjct: 449 IKTAVEDP 456


>Z77659-4|CAB01163.1|  507|Caenorhabditis elegans Hypothetical
           protein F23B12.5 protein.
          Length = 507

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 3/133 (2%)
 Frame = +2

Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
           +AV+TP GL+ P++ N  +     I   +  LA++AR G L P + QGGTFT+SN G+FG
Sbjct: 373 VAVSTPAGLITPIIFNAHAKGLATIASEIVELAQRAREGKLQPHEFQGGTFTVSNLGMFG 432

Query: 296 SLLSM-PIINMPQSCILGMHAIFQR--PVAIKGKVEIRPMMYLALSYDHRLIDGREAVLF 466
           S+     IIN PQSCIL +     +  P   +G  +I+ M  + LS DHR +DG    ++
Sbjct: 433 SVSDFTAIINPPQSCILAIGGASDKLVPDEAEGYKKIKTMK-VTLSCDHRTVDGAVGAVW 491

Query: 467 LRKVKAGVEDPNS 505
           LR  K  +E P++
Sbjct: 492 LRHFKEFLEKPHT 504


>Z81044-2|CAB02813.1|  337|Caenorhabditis elegans Hypothetical
           protein C30H6.7 protein.
          Length = 337

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
 Frame = +2

Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
           +AVATP GL+ P++ N + +    I   +  L+  AR   L P   QGG+FTISN G+FG
Sbjct: 189 VAVATPTGLITPIVENSDILGVLAISSKVKELSGLARESKLKPQQFQGGSFTISNLGMFG 248

Query: 296 SLLSM-PIINMPQSCILGMHAIFQRPVAIKGKVEIRPMMYLALSYDHRLIDGREAVLFLR 472
           S+ +   IIN PQ  IL +       V++ G++E + +M + L +D R I    A  FL 
Sbjct: 249 SVTNFTAIINPPQCAILTIGGTRSEVVSVDGQLETQKLMGVNLCFDGRAISEECAKRFLL 308

Query: 473 KVKAGVEDP 499
                + DP
Sbjct: 309 HFSESLSDP 317


>Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical
           protein ZK669.4 protein.
          Length = 448

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
 Frame = +2

Query: 116 IAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKARTGNLTPADMQGGTFTISNGGVFG 295
           +A+ TP GLVVP ++N E      I   +N L E  +   +   D+  GTF++SN G  G
Sbjct: 312 LAMDTPGGLVVPNIKNCEQRSIFEIAQELNRLLEAGKKQQIKREDLIDGTFSLSNIGNIG 371

Query: 296 SLLSMPIINMPQSCILGMHAIFQRPVAIKGKVEIRPMMYLALSY--DHRLIDGREAVLFL 469
              + P++  PQ  I  +  I + P   K    + P+  + +S+  DHR++DG     F 
Sbjct: 372 GTYASPVVFPPQVAIGAIGKIEKLPRFDKHD-NVIPVNIMKVSWCADHRVVDGATMARFS 430

Query: 470 RKVKAGVEDPNS 505
            + K  +E P++
Sbjct: 431 NRWKFYLEHPSA 442


>AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical
           protein Y54G2A.20 protein.
          Length = 608

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +3

Query: 324 CRNPAFWECTLSSNDPSL 377
           C+NPA ++CTL+++ P++
Sbjct: 568 CKNPAHYDCTLNAHAPTI 585


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/37 (27%), Positives = 26/37 (70%)
 Frame = +2

Query: 113 IIAVATPRGLVVPVLRNVESMDYPRIELAMNALAEKA 223
           ++ ++  +G+V   ++ ++S + P ++LAM+A A+K+
Sbjct: 468 VMEISGVKGIVHDAMKMLKSTEMPELDLAMDANAKKS 504


>Z75530-1|CAA99791.2|  186|Caenorhabditis elegans Hypothetical
           protein C47E8.1 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -1

Query: 411 YIIGLISTLPLIATGRWKIACIPRMQDCGMFMIGIDNNEPNTPPL----LIVNVPPCMSA 244
           +I GLIST+ +IA  RW     P+M    +      N     PP+    +  NV  C++ 
Sbjct: 56  FITGLISTVWMIACFRWLNLHGPKMTRNEVIFFEASNLLELDPPVFRFGMTANVDDCLTP 115

Query: 243 G 241
           G
Sbjct: 116 G 116


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 60  RPPLGPPITSRRPARRSPN 4
           RPP+ PP   RRP R  P+
Sbjct: 159 RPPMTPPSPQRRPPRTPPS 177


>AF099918-5|AAK29841.2|  391|Caenorhabditis elegans Hypothetical
           protein H05C05.3 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 324 CRNPAFWECTLSSND 368
           C+NPA ++CTL  ND
Sbjct: 348 CKNPAHYDCTLIVND 362


>AC006676-5|AAK71383.2|  172|Caenorhabditis elegans Hypothetical
           protein M04F3.4 protein.
          Length = 172

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 217 FGERIHSQFYSRVVHRFDVTEHGN 146
           FG R+  QFY+ ++H+FD   H N
Sbjct: 102 FGYRLSPQFYNILMHKFD-RSHSN 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,764,373
Number of Sequences: 27780
Number of extensions: 245963
Number of successful extensions: 641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)