Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C13
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    27   2.5  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    26   3.3  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.3  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    25   10.0 
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   10.0 
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    25   10.0 

>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 381 SFVGTSKYMLRVIFYNKLNLNTITKLYHTKRH 286
           S +  ++  L+ + Y KL+L TI K Y  K H
Sbjct: 75  SELDNARIRLQALQYKKLHLKTIIKNYEEKEH 106


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 41  IKNSYMLLTVV*INLKKTQLNKF*HIQRCEPRWRNCASPVLYICNKDYNIIILEEFLTGS 220
           +KN+Y+L+  V +  +K+++N        E R R   S   ++ NK   I+ L++ +   
Sbjct: 223 VKNAYILILNVSLEYEKSEINSGFFYSTSEQRERLVESERKFVDNKLRKIVELKKEVCER 282

Query: 221 QP 226
            P
Sbjct: 283 DP 284


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -3

Query: 411 CGPSCSNF----PWSFVGTSKYMLRVIFYNKLNL 322
           CGP CSN     P  +   +K +L +IF   LNL
Sbjct: 831 CGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNL 864


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 318 TITKLYHTKRHQDYM 274
           TI KL+H K HQ Y+
Sbjct: 45  TIMKLHHDKHHQTYV 59


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 405 PSCSNFPWSFVGTSKYM 355
           P  + FP SFVGT++Y+
Sbjct: 211 PDYTTFPSSFVGTAEYV 227


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 143 NCASPVLYICNKDYNIIILEEF 208
           N   PVL++C+KD +  I++E+
Sbjct: 172 NVHCPVLFLCSKDEDAKIIKEW 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,895
Number of Sequences: 5004
Number of extensions: 45665
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)