Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C13
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical
           protein B0393.9b protein.
          Length = 227

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 248 KKTTATCQAEIPSKTLPVLLYCSLCYKCITLGWRSCAT*VH 126
           K ++++C+  I  K    L+ C +C+ C+  G R C T  H
Sbjct: 17  KCSSSSCKTVICPKQPGKLISCDMCHTCLDSGSRFCYTSDH 57


>Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical
           protein T07C12.1 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 449 KSYSHDIGTNCVYTDIHSLSRKILENLAVGRLWYS 553
           +++ HD G NC  T++ SL      +  V R W++
Sbjct: 164 ENFLHDYGENCTTTNLVSLLYNEASHKIVSRSWFT 198


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +1

Query: 265 TLYHVILVAFRVIKFSYCVQVKFIIEDNA*HVF--*GADKAPWKVRAGW----ATVLLQL 426
           TL  + ++AF ++ FS CV + F +   A  +      D    ++   W       L+ +
Sbjct: 437 TLKTIYIIAFAIVLFSVCVAIPFGLFQAADEIDGPIKCDSESCELIVKWLLFCIACLILM 496

Query: 427 GNADTRLKILLT*HWH 474
           G   T L + ++ HWH
Sbjct: 497 GCTGTLLFVTVSLHWH 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,741
Number of Sequences: 27780
Number of extensions: 264451
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)