Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C13
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.4  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 408 GPSCSNFPWSFVGTS 364
           G  C N  W FVG S
Sbjct: 410 GTICENSAWGFVGNS 424


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 248 KKTTATCQAEIPSKTLPVLLY 186
           KKT      EIP+ TLP   Y
Sbjct: 352 KKTRLRWMMEIPNVTLPTSTY 372


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 452 IFNLVS-ALPSCSKTVAHPARTFHGALSAPQNTCYALS 342
           IF ++  +  S S  VA+  R FH    +P +T  ALS
Sbjct: 70  IFGVIGGSYSSVSLQVANLLRLFHIPQISPASTAKALS 107


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 452 IFNLVS-ALPSCSKTVAHPARTFHGALSAPQNTCYALS 342
           IF ++  +  S S  VA+  R FH    +P +T  ALS
Sbjct: 160 IFGVIGGSYSSVSLQVANLLRLFHIPQISPASTAKALS 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,863
Number of Sequences: 438
Number of extensions: 3356
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)