Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C13
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56430.1 68416.m06276 expressed protein unknown protein At2g4...    30   1.2  
At3g50150.1 68416.m05482 expressed protein contains Pfam profile...    29   2.1  
At5g41290.1 68418.m05018 receptor-like protein kinase-related co...    27   6.4  
At5g37970.1 68418.m04573 S-adenosyl-L-methionine:carboxyl methyl...    27   6.4  
At3g50120.1 68416.m05479 expressed protein contains Pfam profile...    27   6.4  
At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969...    27   8.5  

>At3g56430.1 68416.m06276 expressed protein unknown protein
           At2g40800 - Arabidopsis thaliana, EMBL:AC007660
          Length = 434

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -1

Query: 482 HNLCQCHVSKIFNLVSALPSCSKTVAHPARTFHGALSAPQNTCYALSSII 333
           H       SK F L   LPS   +   P  +FH  LS P +    LS I+
Sbjct: 55  HTFSSRPTSKNFGLSQILPSNGVSQLQPKTSFHSFLSRPTSKNVGLSQIL 104


>At3g50150.1 68416.m05482 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function; expression
           supported by MPSS
          Length = 509

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 373 DKAPWKVRAGWATVLLQLGNADTRLKILLT*HWHKLCVHRYPFTKQKNTGK 525
           ++ P + R  W  V+      +  L    T  W KLC++R PF  Q+N  K
Sbjct: 57  EEKPRETREEW--VISIKDKMEKALSYDATNSWDKLCIYRVPFYLQENDKK 105


>At5g41290.1 68418.m05018 receptor-like protein kinase-related
           contains weak similarity to receptor-like protein kinase
           homolog RK20-1 (GI:4530126) [Phaseolus vulgaris];
           contains Pfam PF01657: Domain of unknown function
          Length = 287

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/72 (22%), Positives = 30/72 (41%)
 Frame = -3

Query: 549 YHSLPTAKFSSIFLLSEWISVYTQFVPMSCE*DFQSCISVTKL*QNCGPSCSNFPWSFVG 370
           Y+ + T +F +++ L   +       P +C     +C+ +    Q     C N  W+F+ 
Sbjct: 180 YYLMDTTRFDNLYDLESIVQCTPDLDPRNCT----TCLKLAL--QELTECCGNQVWAFIY 233

Query: 369 TSKYMLRVIFYN 334
           T   M+    YN
Sbjct: 234 TPNCMVSFDTYN 245


>At5g37970.1 68418.m04573 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292], theobromine synthase [Coffea
           arabica][GI:13365751], SAM:jasmonic acid carboxyl
           methyltransferase [GI:13676829]
          Length = 412

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 431 LPSCSKTVAHPARTFHGALSAPQNTCYALSSIINLT*TQ*LNFITRNATKIT*YRVKFNE 252
           LP  S  + H + T H   + PQ+ C   S  +N +  Q  N +    TK   Y+++F +
Sbjct: 192 LPKNSLHIGHTSYTLHWLSNVPQHVCDKKSPALNKSYIQ-CNNLVDEVTKA--YKIQFRK 248


>At3g50120.1 68416.m05479 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function; expression
           supported by MPSS
          Length = 531

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 469 WHKLCVHRYPFTKQKNTGK 525
           W KLC++R P+  Q+N  K
Sbjct: 100 WGKLCIYRVPYYLQENDNK 118


>At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 346

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 518 VFFCLVNGYLCTHNLCQCHVSKIFNLVSALPSC 420
           +FFC     L  HN C  H+S   + + A P C
Sbjct: 61  LFFCPEAASLLLHNFCIYHISPPGHELGAAPIC 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,780,054
Number of Sequences: 28952
Number of extensions: 227398
Number of successful extensions: 470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)