Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C11
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203 29 2.4
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 29 3.2
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 5.6
11_01_0104 - 781471-781888,781994-782101,782195-782511 27 7.4
05_04_0032 + 17363039-17363436,17363626-17363936,17364058-173641... 27 7.4
04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684... 27 7.4
03_05_0165 + 21435948-21436144,21436234-21436318,21436690-214367... 27 9.8
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 27 9.8
>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
Length = 357
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -1
Query: 125 KNILEKGFDTTGTGFKSIE--SWWYKSRLGFP 36
+NI GF+ + +SIE S+WY SRL +P
Sbjct: 230 RNIANGGFNYVKSNERSIEFYSFWYSSRLRYP 261
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 487 LKRWSPLWMNMTWISRMHFTWTRLRCKRRSLI 392
+KRWS + + W+SR F R RRSLI
Sbjct: 98 VKRWSNHKIMVRWLSRFFFYLDRYFISRRSLI 129
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 27.9 bits (59), Expect = 5.6
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = -2
Query: 535 TREELDFPGVKVNA----LYLKRWSPLWMNMTWISRMHFTWTRLRCKRRSLIWSTLRVCG 368
T E D KVN L K + P WM+ W R+ W + + SL + R G
Sbjct: 593 TEEPKDNQTEKVNEDEDPLLWKPFPPAWMHPNWWERLCEYWAKEEVLQMSLKYRKNRFVG 652
Query: 367 VLITSLSRCRSMLCQIRLL 311
S RS Q +L+
Sbjct: 653 GRAHHTSGSRSFAMQRQLM 671
>11_01_0104 - 781471-781888,781994-782101,782195-782511
Length = 280
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 269 MGRLMSINDKRLDMLEIDSFVYKLDT---GKNNIVRSSLEMHGVIEQRPWTKNILEKGFD 99
+G ++S +DK + MLE+ KL GK + S++ H + E+ + + K +
Sbjct: 51 LGDILSCSDKAISMLELGGDTKKLTNLVGGKRKGDKHSMDNHNLEEEAKESVSKRRKNAE 110
Query: 98 TTGT 87
TG+
Sbjct: 111 HTGS 114
>05_04_0032 +
17363039-17363436,17363626-17363936,17364058-17364120,
17364697-17365181,17365772-17366122
Length = 535
Score = 27.5 bits (58), Expect = 7.4
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = -1
Query: 410 QKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVD---AVVRIFIGPKYDCMGRLMSINDK 240
QK ++ M + R +HQ K ++ +D AVV G DC+ M ND
Sbjct: 325 QKIQNQMTCCKKDGRRSHQKTKCMHTLLQKDDLDRSLAVVPPVFGRSTDCVLECMKKNDA 384
Query: 239 RLDMLEID--SFVYKLDTGKNNIVRSS 165
+ D ++ D ++ GK+N + ++
Sbjct: 385 QEDAVQSDLNGITIEMFCGKDNFLTNA 411
>04_04_1249 -
32067644-32067787,32068245-32068346,32068415-32068438,
32068439-32068543,32068625-32068729,32068885-32068966,
32069254-32069456,32069534-32069692,32070045-32070154,
32070264-32070405,32070544-32070690,32070773-32070847,
32070923-32071132,32071223-32071426,32071514-32071633,
32071743-32071852,32072033-32072177,32072266-32072499,
32072611-32072646
Length = 818
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 88 VPVVSKPFSNMFLVHGLCSITPCISSELRTMLFLPVS 198
VP + + + V LC PC+ + +T++F+ +S
Sbjct: 717 VPFRNSKLTYLLQVSDLCKWMPCLGGDSKTLMFVNIS 753
>03_05_0165 +
21435948-21436144,21436234-21436318,21436690-21436768,
21436892-21437005,21437249-21437361,21437570-21437677,
21437760-21437879
Length = 271
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -2
Query: 235 LTCSKSIASSINSTLVRTTSSAARSRCTA 149
+TC +S +SS ++ +VRT ++AA + TA
Sbjct: 30 ITCHRSSSSSSSARVVRTGAAAAPAAATA 58
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 79 LKPVPVVSKPFSNMFLVHGLCSITPCISSELRTMLFLP 192
+ P ++ P+SNM L+HG ++P ++ ++ F P
Sbjct: 660 IPPTSLIGAPWSNMHLIHGY--VSPPMAHYVQNHTFAP 695
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,690,730
Number of Sequences: 37544
Number of extensions: 288899
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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