Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C11
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.46 
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)                 29   3.3  
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)                   28   5.7  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         28   5.7  
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_12341| Best HMM Match : Death (HMM E-Value=3.3e-08)                 28   5.7  
SB_23528| Best HMM Match : RVT_1 (HMM E-Value=0.00042)                 27   7.6  

>SB_59063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 208 SINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVS 101
           S+NS +   + ++   RC  +S  D  L+TYW+KV+
Sbjct: 229 SLNSCVSCISQASRADRCLPVSRSDSILETYWRKVN 264


>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
          Length = 664

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 378 RNVDHIRXXXXXXXXVQVKCIRDIHVIFIHKGDHLFRYNAFTLTPGKS 521
           RN+DHI          +V+ + D     ++ G+ L+        PGKS
Sbjct: 3   RNIDHILTIASIITNCRVEDVPDCFRTRLYNGEDLYEIEVTKFPPGKS 50


>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
          Length = 649

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 112 KKVSTQLEQVSRASRVGGIRVALAFRTGFCY 20
           KK+ST+   + RAS V  +++   F TG CY
Sbjct: 613 KKMSTRSMGLKRASSVKYVQLLYLFNTGKCY 643


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = -2

Query: 247 MTNALTCSKSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWKKVSTQLEQVSRASR 68
           +TN +  +KS+ + I  T  + T+   RSR   +S      + Y+K  +  L  +S  S 
Sbjct: 283 LTNQIRRNKSVTNQIRRTNEKVTNQIKRSR-LPISLGVTSKQPYYKGNARSLIYISGTSL 341

Query: 67  VGGIRVALAFRTGFCYLSE 11
           V  + V        C+L +
Sbjct: 342 VPPLTVRTETPNTLCFLQQ 360


>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1420

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -1

Query: 389  VYVARMRRLNHQPFKVSIDVMSDKAVDAVVRIFIGPKYDCMGRLMSINDKRLDMLEID 216
            V++A + + + +P   S   +  +    ++   IGP +  +GR + +++  LD +E D
Sbjct: 1097 VFIALLVKTSSEPLPKSGSSIVSRDTLMLLAREIGPAWKALGRALLLDNAELDQIEAD 1154


>SB_12341| Best HMM Match : Death (HMM E-Value=3.3e-08)
          Length = 194

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 290 IGPKYDCMGRLMSINDKRLDMLEIDSFVYKLDTGK 186
           IG ++  +GR++ + D  LDM++ D    K  + K
Sbjct: 117 IGKRWKALGRVLRLKDSELDMIDEDESKLKEKSNK 151


>SB_23528| Best HMM Match : RVT_1 (HMM E-Value=0.00042)
          Length = 445

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 250 SMTNALTCSKSIASSINSTLVRTTSSAARSRCTALSNRDRGLKTYWK-KVSTQLE 89
           S+ + + C +S+ ++  + L      + R +C AL  +D     YW+ KV   ++
Sbjct: 27  SLLDLVGCVRSLETASRAVLCHQAVISKRQKCLALFGKDSQQFCYWRNKVQVHIK 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,071,802
Number of Sequences: 59808
Number of extensions: 334207
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)