Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C11
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    30   0.88 
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    30   0.88 
At5g55210.1 68418.m06882 expressed protein similar to unknown pr...    30   1.2  
At2g05645.1 68415.m00604 hypothetical protein                          30   1.2  
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si...    28   3.5  
At2g46915.1 68415.m05859 expressed protein  and genscan                28   3.5  
At1g48690.1 68414.m05449 auxin-responsive GH3 family protein sim...    28   3.5  
At5g10710.2 68418.m01241 expressed protein                             28   4.7  
At5g10710.1 68418.m01240 expressed protein                             28   4.7  
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ...    28   4.7  
At4g26350.1 68417.m03788 F-box family protein contains F-box dom...    27   6.2  
At2g34210.1 68415.m04186 KOW domain-containing transcription fac...    27   6.2  
At5g22060.1 68418.m02569 DNAJ heat shock protein, putative stron...    27   8.2  
At3g01200.1 68416.m00026 expressed protein contains Pfam domain ...    27   8.2  

>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 544 PSYTREELDFPGVKVNALYLKRWSPLWMNMTWIS--RMHFTWTRLRCKRRSL 395
           P+  R  +    + ++  +L+ W  +W+   WIS     FTW  L+ KR+++
Sbjct: 273 PTKDRNPVKRFAMNISYFFLENWKRIWVLTLWISICITLFTWKFLQYKRKTV 324


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 544 PSYTREELDFPGVKVNALYLKRWSPLWMNMTWIS--RMHFTWTRLRCKRRSL 395
           P+  R  +    + ++  +L+ W  +W+   WIS     FTW  L+ KR+++
Sbjct: 273 PTKDRNPVKRFAMNISYFFLENWKRIWVLTLWISICITLFTWKFLQYKRKTV 324


>At5g55210.1 68418.m06882 expressed protein similar to unknown
           protein (pir||T04913)
          Length = 168

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 205 INSTLVRTTSSAARSRCTAL-SNRDRGLKTYWKKVSTQLEQVSRASRVGG 59
           + S L RT+S  +    TA+ S R R  K  W +VST    V RAS+  G
Sbjct: 4   VGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNG 53


>At2g05645.1 68415.m00604 hypothetical protein
          Length = 204

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 61  HQLSMLLKPVPVVSKPFSNMFLVHG 135
           H+  +LL P P++S P S+MF+ HG
Sbjct: 130 HRPFVLLMPRPLLSSPHSHMFVEHG 154


>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
           similarity to unusual floral organs (UFO) GI:4376159
           from [Arabidopsis thaliana]
          Length = 403

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 292 LLVPNTIAWAAS*ASMTNALTCSKSIASSINSTLVRTTSSAARS 161
           L  PN I+W       + +LTC+ S+ SS N  L  + S ++ S
Sbjct: 112 LFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVS 155


>At2g46915.1 68415.m05859 expressed protein  and genscan
          Length = 708

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 446 ITYALYLDQAEMQKKKSDMVYVARMRRLNHQPFKVSIDVMSDKAVDAVVRI 294
           +TYA+ L QA   +  S      R  R  +  FK+ +++  +KA+  +VR+
Sbjct: 624 LTYAIIL-QAGKNQNMSYKGVGDRCERFMYDTFKIKVEMRVEKAISTLVRL 673


>At1g48690.1 68414.m05449 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 190

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 82  KPVPVVSKPFSNMFLVHGLCSIT 150
           K  PV +K F NM  +H LCS T
Sbjct: 99  KIFPVNNKYFENMIFIHALCSST 121


>At5g10710.2 68418.m01241 expressed protein
          Length = 312

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 183 VLTSVEFIDEAIDFEHVKAFVIDAHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERLVI 362
           VL S  F+++ I  EH   F +   +  + ++F   K   D V  L+   +DR  +  +I
Sbjct: 142 VLESKSFLEKMIVLEHTIPFFLPLSDLENDLLFSNAKKFIDNVGDLLQAYVDRKEQVRLI 201

Query: 363 K 365
           K
Sbjct: 202 K 202


>At5g10710.1 68418.m01240 expressed protein
          Length = 312

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 183 VLTSVEFIDEAIDFEHVKAFVIDAHEAAHAIVFGTNKYTNDCVNSLI*HNIDRHLERLVI 362
           VL S  F+++ I  EH   F +   +  + ++F   K   D V  L+   +DR  +  +I
Sbjct: 142 VLESKSFLEKMIVLEHTIPFFLPLSDLENDLLFSNAKKFIDNVGDLLQAYVDRKEQVRLI 201

Query: 363 K 365
           K
Sbjct: 202 K 202


>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
           similar to SP|Q92973 Importin beta-2 subunit
           (Transportin) {Homo sapiens}; contains Pfam profile
           PF03810: Importin-beta N-terminal domain
          Length = 891

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 292 NIRTTASTALSDITSIDTLKGW 357
           NIRTT  T +S I +I+ + GW
Sbjct: 109 NIRTTVGTIISVIVNIEGVSGW 130


>At4g26350.1 68417.m03788 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 431

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 508 VKVNALYLKRWSPLWMNMTWISRMHFTWTRLRCKRRSLIWSTL 380
           V V +L  KRW  LW    W+ ++ + +TR   +    ++ +L
Sbjct: 24  VIVTSLLSKRWGSLW---RWVPKLEYDFTRQNMRFVKFVYRSL 63


>At2g34210.1 68415.m04186 KOW domain-containing transcription factor
           family protein
          Length = 990

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -1

Query: 323 DKAVDAVVRIFIGPKYDCMGRLMSINDKRLDMLEIDSFVYKLDTGKNNIVRSSL 162
           D  V   V+I +GP     GRL+ + DK L  +E+++   K+ TGK +  R ++
Sbjct: 683 DHLVGTYVKIRLGPFKGYSGRLVEVKDK-LVRVELEA---KIVTGKLHFERKAI 732


>At5g22060.1 68418.m02569 DNAJ heat shock protein, putative strong
           similarity to SP|O60884 DnaJ homolog subfamily A member
           2 (Dnj3) Homo sapiens, several plant DnaJ proteins from
           PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684
           DnaJ central domain (4 repeats), PF01556 DnaJ C terminal
           region
          Length = 419

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -1

Query: 515 PWCQSERVVSEKMVTFMD-----EYDMDITYALYLDQAEMQKKKSDMVYVARMRRLNHQP 351
           P C+ E+VVSEK V  ++     +++  IT++   D+A       D+V+V + +   H  
Sbjct: 209 PQCKGEKVVSEKKVLEVNVEKGMQHNQKITFSGQADEAP-DTVTGDIVFVIQQK--EHPK 265

Query: 350 FK 345
           FK
Sbjct: 266 FK 267


>At3g01200.1 68416.m00026 expressed protein contains Pfam domain
           PF03618: Domain of unknown function (DUF299)
          Length = 377

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -1

Query: 266 GRLMSINDKRLDMLEIDSFVYKLDTG--KNNIVRSSLEMHGVIE--QRPWTKNILEKGFD 99
           GR+ ++ND     +E   F  K D G    N+ ++ + + GV    + P +  I +KG+ 
Sbjct: 202 GRVKTLNDAYFKRIEAIEFTIKQDDGTLPENLSKADIVLVGVSRTGKTPLSTYIAQKGYK 261

Query: 98  TTGTGF 81
                F
Sbjct: 262 VANVPF 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,209
Number of Sequences: 28952
Number of extensions: 231470
Number of successful extensions: 718
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)