Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C08
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    26   4.7  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   8.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.3  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    25   8.3  

>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 448 GFDYRRLSNGTCIPTKDCPP 389
           G  Y+ LSN T IP K  PP
Sbjct: 537 GLPYQILSNATSIPLKQQPP 556


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 300 SPSGVA*LQSSPGQYRGQELYFSWGPSHGNGGQSLVGM 413
           S SG A    +P Q  G   YFS GPS   GG    G+
Sbjct: 60  SESGQATPVLTP-QLEGMNDYFSLGPSKRTGGSMTPGL 96


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
 Frame = +2

Query: 200 IGNTSPVKSPISFIASTGWSTLENNKYMPENVTLAIGCGVTAIF------SRAVPRTRIV 361
           I NTS + S  SF  +TG      + ++P +V  +     +++       S + P T   
Sbjct: 202 ITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSS 261

Query: 362 LFMGSITWERGTVLGRNASSITQSSIVKST 451
             + S T    T L    S+ T  S   S+
Sbjct: 262 SSLSSFTPSYSTNLTTTGSTTTTGSATVSS 291


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/96 (16%), Positives = 43/96 (44%)
 Frame = +2

Query: 221 KSPISFIASTGWSTLENNKYMPENVTLAIGCGVTAIFSRAVPRTRIVLFMGSITWERGTV 400
           +  +S + ++    L N + M   ++ ++    + +   A+  T  ++    +    G++
Sbjct: 109 RQQMSNVEASNAQLLTNQRSMQTEISESLLHLASVLKENALSFTNALVTDNQVVERTGSL 168

Query: 401 LGRNASSITQSSIVKSTFASRWWAFFWLRAVRLIVV 508
           L +NA S+  ++    +++      FWL+   +I V
Sbjct: 169 LDKNAHSLRHANHGVQSYSKSKRLSFWLQLGMIIAV 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,965
Number of Sequences: 5004
Number of extensions: 52081
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)