Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C08
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94...    30   1.6  
03_02_0583 + 9635002-9637299                                           29   2.1  
12_01_0580 + 4745639-4746528,4746666-4746747                           29   2.8  
03_02_0819 + 11511347-11511562,11511631-11511771                       29   2.8  
05_06_0147 + 25986259-25987701                                         29   3.7  
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331...    29   3.7  
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164...    28   4.8  
05_06_0148 + 25989595-25990956                                         27   8.5  

>03_01_0121 +
           940338-940637,941023-941324,941417-941969,943889-944848
          Length = 704

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 379 DGPHEKYNSCPRYCPGEDCSHATPDGECHV 290
           DG     +    YCP E C HA+ DGE HV
Sbjct: 415 DGTEPLAHIAVDYCP-EACHHASEDGEIHV 443


>03_02_0583 + 9635002-9637299
          Length = 765

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 353 RIVLFMGSITWERGTVLGRNASSITQSSIVK-STFASRWWAFFWLRAVR 496
           R+ +  G +     T  G N ++   +S  K +T+A+ WWA  W+ A R
Sbjct: 418 RMSIARGKLVSGATTSTGDNGTAAAAASTAKVATYANPWWAEVWVLARR 466


>12_01_0580 + 4745639-4746528,4746666-4746747
          Length = 323

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 363 FSWGPSHGNGGQSLVGMQVPLLNRL*SNPHLQAGGGH 473
           FS GPS G+GG S   +  P+L  L + P+   GG H
Sbjct: 217 FSGGPSSGSGGGSTGTLGSPILG-LVTAPNTTGGGEH 252


>03_02_0819 + 11511347-11511562,11511631-11511771
          Length = 118

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 310 VWRDCNLLPGSTEDKNC 360
           +W DCN+L  ST  +NC
Sbjct: 60  IWADCNMLTSSTAGQNC 76


>05_06_0147 + 25986259-25987701
          Length = 480

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 436 RRLSNGTCIPTKDCPPFPCDGP 371
           R L  G CIP +  PP  C GP
Sbjct: 225 RALREGACIPDRPTPPVYCIGP 246


>01_06_0898 -
           32832665-32832724,32832761-32832815,32832957-32833135,
           32833218-32833328,32833600-32833647,32833810-32833949,
           32834402-32834539,32834660-32834804,32834936-32835002,
           32835226-32835329,32835444-32835647
          Length = 416

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/71 (23%), Positives = 28/71 (39%)
 Frame = -1

Query: 427 SNGTCIPTKDCPPFPCDGPHEKYNSCPRYCPGEDCSHATPDGECHVFGHILIILQCRPAC 248
           + G+      CPP P       + SC    P    S + PD +       L++ +  P+ 
Sbjct: 5   AGGSTASAAACPPAPSRPTDPDFLSCVLQPPTPSSSSSRPDDDYAALRR-LLLRRKPPSA 63

Query: 247 RCNKTYWRLNG 215
             ++  WR NG
Sbjct: 64  LQHRMEWRCNG 74


>11_01_0209 -
           1642473-1642579,1642783-1642826,1642935-1643023,
           1643114-1643158,1643484-1643591,1643691-1643776,
           1643917-1644004,1644211-1644387,1644720-1644795,
           1644898-1644947,1645030-1645092,1645332-1645434,
           1645513-1645615,1645731-1645791,1646268-1646308,
           1646792-1646825
          Length = 424

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 218 VKSPISFIASTGWSTLENNKYMPENVTLAIGCGVTAI-FSRAV 343
           +KS ++   STG S L+NN  + E+   A G   TA+ F +A+
Sbjct: 325 MKSALAITISTGISLLQNNAVLQEHRGTANGVSTTAMSFFKAI 367


>05_06_0148 + 25989595-25990956
          Length = 453

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 430 LSNGTCIPTKDCPPFPCDGP 371
           L +G C+P +  PP  C GP
Sbjct: 205 LGDGACVPDRPTPPVYCIGP 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,576,256
Number of Sequences: 37544
Number of extensions: 355493
Number of successful extensions: 911
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)