Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C08
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.2  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 401 LGRNASSITQSSIVKSTFASRW 466
           +G N ++IT SSI ++ F S +
Sbjct: 3   IGNNETNITNSSITETYFVSAY 24


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 415  CIPTKDCPPFPCDGPHEKYNSCPRYCPGEDCSHAT 311
            C P + CPP P  G  E  +   R    E C +AT
Sbjct: 1695 CAPNRRCPPPPRMGSAEGLSH--RGMEDEICPYAT 1727


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +2

Query: 197 FIGNTSPVKSPISFIASTGWSTLENNKYMPENVTLAI 307
           F+G+  PVK     + S     + N+ +  ++V   I
Sbjct: 364 FVGSNKPVKDEYMLVLSNRMQKIVNDDFNFDDVNFRI 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,273
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)