Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C08
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19460.1 68417.m02862 glycosyl transferase family 1 protein c...    30   1.3  
At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3) ident...    28   4.1  
At3g59700.1 68416.m06661 lectin protein kinase, putative similar...    28   5.4  
At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransfer...    27   7.1  
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con...    27   9.4  
At4g11690.1 68417.m01867 pentatricopeptide (PPR) repeat-containi...    27   9.4  

>At4g19460.1 68417.m02862 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 516

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 402 RTVPRSHVMDPMKSTILVLGTAREKIAVTPHPMASVTFSGIYLLFSNV 259
           RT+ RS +  P  S+ +VLG A   +    HP+    F+ I   +SNV
Sbjct: 319 RTLFRSKLGLPENSSAIVLGAAGRLVKDKGHPLLFEAFAKIIQTYSNV 366


>At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3)
           identical to receptor lectin kinase 3 [Arabidopsis
           thaliana] gi|4100060|gb|AAD00733
          Length = 659

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
 Frame = +2

Query: 167 FELSNLLRTLFIGNTSPVKSPISFIAS----TGWSTLENNKYMPENVTLAIGCGVTAIFS 334
           F L+ L    F   TS V   + +IA     TG +T   + Y    V L + CG   I  
Sbjct: 481 FGLAKLYDQGFDPQTSRVAGTLGYIAPELLRTGRATTSTDVYAFGLVMLEVVCGRRLIER 540

Query: 335 RAVPRTRIVLFMGSITWERGTVLGRNASSITQ 430
           RA     +++      WE G +      SI Q
Sbjct: 541 RAAENEAVLVDWILELWESGKLFDAAEESIRQ 572


>At3g59700.1 68416.m06661 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733
          Length = 661

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
 Frame = +2

Query: 167 FELSNLLRTLFIGNTSPVKSPISFIAS----TGWSTLENNKYMPENVTLAIGCGVTAIFS 334
           F L+ L    F   TS V     +IA     TG +T   + Y    V L + CG   I  
Sbjct: 483 FGLAKLYDQGFDPETSKVAGTFGYIAPEFLRTGRATTSTDVYAFGLVMLEVVCGRRIIER 542

Query: 335 RAVPRTRIVLFMGSITWERGTVLGRNASSITQ 430
           RA      ++      WE G +      SI Q
Sbjct: 543 RAAENEEYLVDWILELWENGKIFDAAEESIRQ 574


>At5g55360.1 68418.m06898 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase similarity to wax synthase
           wax synthase - Simmondsia chinensis, PID:g5020219
           similar to wax synthase [gi:5020219] from Simmondsia
           chinensis
          Length = 342

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 371 GSITWERGTVLGRNASSITQSSIVKSTFASRWW 469
           G +TW     L     ++ + ++ KSTF  RWW
Sbjct: 256 GEVTW---FFLLHGVCTVAEVAVKKSTFVRRWW 285


>At5g19520.1 68418.m02325 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 742

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 398 VLGRNASSITQSSIVKSTFASRWWAFFWLRAVRLIVVSTAGAIVKRTIDRAVIFNFHWRY 577
           +LG    S+T   + K T    W   FW   V L++V+ +G +V       V+F     Y
Sbjct: 190 ILGALIVSLTIDVVNKHTI---WGLEFWKWCV-LVMVTLSGMLVTNWFMHFVVFIIEKNY 245

Query: 578 ILR 586
           +LR
Sbjct: 246 LLR 248


>At4g11690.1 68417.m01867 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 566

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 386 ERGTVLGRNASSITQSSIVKSTFASRWWAFFWLRAVRLIV-VSTAGAIVK 532
           + G V G N  +   + +V S+  ++WW+FF     ++++ V + G ++K
Sbjct: 122 DNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIK 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,482,863
Number of Sequences: 28952
Number of extensions: 278260
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)