Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C07
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    27   6.6  
10_02_0189 - 6486737-6486916,6486988-6487260,6487364-6487576,648...    27   6.6  
09_02_0530 + 10285844-10287217                                         27   6.6  
04_04_0557 + 26227263-26227707,26228179-26228342,26228432-262285...    27   8.7  
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489...    27   8.7  
03_02_0438 + 8470290-8470378,8470900-8470990,8471074-8471134,847...    27   8.7  
01_06_1809 - 40029628-40030539                                         27   8.7  

>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 281 NSAWKGQYSQLCSMCQ 328
           +SAW G +SQLC  C+
Sbjct: 363 SSAWTGNWSQLCPTCK 378


>10_02_0189 -
           6486737-6486916,6486988-6487260,6487364-6487576,
           6489081-6489206
          Length = 263

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 170 GRPLSSLKSLMGPCIQRFC*LRC 102
           G+P+  L  L G C++ FC + C
Sbjct: 137 GQPIHQLDQLCGQCLRSFCGVSC 159


>09_02_0530 + 10285844-10287217
          Length = 457

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 149 LMKRAVFPKMNDHSISPKENELRALSSFFSKSCIVGKWSPDPKTNSAWKGQYSQLCS 319
           L+ R +  ++ D+++SP   + R L +  S + +  +  P PK   A  G    LC+
Sbjct: 81  LLGRFLVGRLEDYTVSPASADFRRLLAQLSSAGLFERVGPTPKVQVA--GMLLLLCA 135


>04_04_0557 +
           26227263-26227707,26228179-26228342,26228432-26228529,
           26228620-26228754,26228842-26229031,26229117-26230223
          Length = 712

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 270 SGDHLPTIQDLLKKEDRALSSFSLGDMLWSF 178
           +G H P   DL KK+ R L  +     LW+F
Sbjct: 224 NGFHTPEGADLAKKQVRTLGKYFSISFLWAF 254


>03_05_1094 -
           30348366-30348467,30348571-30348753,30348833-30348934,
           30349617-30349967,30350049-30350276,30350353-30350509,
           30351189-30351370,30351443-30351866,30351949-30352892,
           30353509-30353773,30354558-30355120
          Length = 1166

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +2

Query: 203 ENELRALSSFFSKSCIVGKWSPDPKTNSAWKGQYSQLCSMCQHPDKCDYPDD 358
           ENEL   +S    + +V + +P   +  +WK +          P KC  P D
Sbjct: 484 ENELEDSASSVHDAAVVVEENPSETSKHSWKSKRHPDMDCNPKPSKCPRPFD 535


>03_02_0438 +
           8470290-8470378,8470900-8470990,8471074-8471134,
           8471678-8471755,8471891-8471964,8472689-8472802,
           8472881-8472988,8473937-8473975,8474046-8474132
          Length = 246

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 188 SISPKENE-LRALSSFFSKSCIVGKWSPDPKTNSAWKGQYSQLCSMCQHPDKCDYP 352
           S + ++NE LR L  F        K S D   +   K QY +L S+  HPDKC +P
Sbjct: 20  SEAERDNEVLRILGCFKLNPFEHLKLSFDSSADEV-KKQYRKL-SLLVHPDKCKHP 73


>01_06_1809 - 40029628-40030539
          Length = 303

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 433 KYNFSESDLAVVMSQTFQRSR 371
           KYN+S  + A   S+TF R+R
Sbjct: 104 KYNYSPGEAAAAFSRTFSRTR 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,636
Number of Sequences: 37544
Number of extensions: 228704
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)