Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C07
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           56   2e-08
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             32   0.18 
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.73 
SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_33226| Best HMM Match : ubiquitin (HMM E-Value=5.6)                 29   2.2  
SB_7372| Best HMM Match : Rad17 (HMM E-Value=2.7e-09)                  29   2.2  
SB_32748| Best HMM Match : Pkinase (HMM E-Value=7.8e-26)               27   5.1  
SB_40876| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-39)                 27   6.8  
SB_53357| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9)                       27   8.9  

>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
 Frame = +2

Query: 32  AVIVVHKDLPINNLDQLKGLRSCHTGVNRNVGYKVPLTILMKRAVFPKMNDHSISPKENE 211
           AV +V     +N +  LKG  +CH      +G+K+P+  L+ + +  +  D  +     E
Sbjct: 116 AVALVRSTTTVN-ITTLKGAITCHPRAEDMIGWKIPVGFLIWKKLMQR-KDCDVYNSAGE 173

Query: 212 LRALSSFFSKSCIVGKWSPDPKTNSAWKGQYSQLCSMCQHPDKC--DYPDDFSGYTGALK 385
                 FF KSC+ G +      N+    +   LC  C +P  C  D  + + GY G+  
Sbjct: 174 ------FFGKSCVPGVFDAANNLNNT---KLPSLCGACSNPT-CPGDESERYYGYNGSYV 223

Query: 386 CLAHNNGEVAFTK 424
           CL    GEVAF +
Sbjct: 224 CLVEGRGEVAFVR 236


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 125  GYKVPLTILMKRAVFPKMNDHSISPK--ENELRALSSFFSKSCIVGKWSPDPKTNSAWK 295
            GY++P T +M + + P  +   ISP   + EL           IVG + PD K N A+K
Sbjct: 2242 GYELPQTRVMGKGLRPDCSRVPISPTKCQKELELARGLPGSLPIVGSFIPDCKPNGAYK 2300


>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = -1

Query: 264 DHLPTIQDLLKKEDRALSSFSLGDMLWSFILGKTALFIKIVNGTLYPTFL 115
           + L  +++LLKK D   +S S+ D  W+F  G+  +F+   N T+Y  F+
Sbjct: 100 EELNELENLLKKHDPDFASTSIEDRKWTF--GRCNVFVTGGN-TMYNNFM 146


>SB_58726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 331 VLAHRAQL-TVLALPS*IGLRIR*PLADDTRLAEKGGQSSQLVLFGRYAVV 182
           VLA RA L + + LPS +GL  R  LA    LA + G +S++ L  R  +V
Sbjct: 313 VLASRAGLPSCVGLPSCVGLASRVGLASRVGLASRVGLASRVGLASRVGLV 363


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -1

Query: 282 LVFGSGDHLPTIQDLLKKEDRALSSFSLGDMLWSFILGKTALFIKIVNGTLYPTFLLTP 106
           L  G+   LP ++ +    D  L++ S  D+L      K+ + +++  GTL PT L  P
Sbjct: 126 LGIGTNLDLPDLKRMASSADNVLTAESFDDLLIVIDEIKSKICLQVPVGTLPPTTLAAP 184


>SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -1

Query: 282 LVFGSGDHLPTIQDLLKKEDRALSSFSLGDMLWSFILGKTALFIKIVNGTLYPTFLLTP 106
           L  G+   LP ++ +    D  L++ S  D+L      K+ + +++  GTL PT L  P
Sbjct: 425 LGIGTNLDLPDLKRMASSADNVLTAESFDDLLIVIDEIKSKICLQVPVGTLPPTTLAAP 483


>SB_33226| Best HMM Match : ubiquitin (HMM E-Value=5.6)
          Length = 211

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 2   EEPDAPFRYEAVIVVHKDLPINNLDQLKGLRSCHTGVNRNVGYKVPLTILMKR 160
           E+P+ PFRY    +VHK + +    +L      H  + +  G+  P+  L  R
Sbjct: 113 EDPEEPFRYVFDWIVHKGMSVRECKEL-----LHPELQQRYGFNCPVDHLRLR 160


>SB_7372| Best HMM Match : Rad17 (HMM E-Value=2.7e-09)
          Length = 421

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 103 HRSQQKRWIQGPINDFNEESGLP 171
           HR Q+K+WI     DF ++  +P
Sbjct: 38  HRGQKKKWIYSSFGDFGDQFDIP 60


>SB_32748| Best HMM Match : Pkinase (HMM E-Value=7.8e-26)
          Length = 187

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 294 FQAELVFGSGDHLPTIQDLLKKEDRALSSFSLGDMLWSFILG 169
           F  + VFG+ D+L     L +   RA+  +S+G +L+ F++G
Sbjct: 127 FMDKQVFGTPDYLAPEVILRQGYGRAVDWWSMGIILYEFLMG 168


>SB_40876| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-39)
          Length = 312

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 406 AVVMSQTFQRSRVTAKVVWVIAFVWVLA 323
           A+V S   Q++   AK  WVI F+WV A
Sbjct: 139 AIVRSMRAQKTLQAAK--WVILFIWVFA 164


>SB_53357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 218 ALSSFFSKSCIVGKWSPDPKTNSAWKGQYSQLCSMCQHPDKCDYPD 355
           A S+  S S  V K+S  P   S  + +    C    HP KC + +
Sbjct: 180 APSTLSSTSASVKKFSSSPLPRSKSENKECYRCGKNHHPSKCRFKE 225


>SB_8888| Best HMM Match : Fer4 (HMM E-Value=3.9)
          Length = 689

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 203 ENELRALSSFFSKSCIVGKWSPDPKTNSAWKGQYSQLCS 319
           +N ++A+  F  +S  + KW  D K  +A++  Y +L S
Sbjct: 115 KNNIKAV--FIDESHCIAKWGKDDKKTAAFRKDYGRLRS 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,468,716
Number of Sequences: 59808
Number of extensions: 266748
Number of successful extensions: 665
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)