Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C07
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25580.1 68414.m03176 no apical meristem (NAM) family protein...    30   0.79 
At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein ...    28   2.4  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    27   5.5  
At3g03330.1 68416.m00331 short-chain dehydrogenase/reductase (SD...    27   7.3  
At5g26720.1 68418.m03167 expressed protein                             26   9.7  
At5g22080.1 68418.m02571 DNAJ heat shock N-terminal domain-conta...    26   9.7  
At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma mem...    26   9.7  

>At1g25580.1 68414.m03176 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to putative NAM protein (GP:21554371)
           (Arabidopsis thaliana)
          Length = 449

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 263 SPDPKTNSAWKGQYSQLCSMCQHP-DKCDYPDDFSGYTGALK 385
           S DP+    WK   S+ C  CQH  D  D  DD+ G    +K
Sbjct: 23  SSDPR-QVVWKSNPSRHCPKCQHVIDNSDVVDDWPGLPRGVK 63


>At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain;
           low similarity to SP:Q96GR4 Zinc finger DHHC domain
           containing protein 12 (Zinc finger protein 400) {Homo
           sapiens}
          Length = 288

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 281 NSAWKGQYSQLCSMCQ 328
           N +WKG +SQLC  C+
Sbjct: 106 NPSWKGNWSQLCPTCK 121


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
 Frame = +2

Query: 71  LDQLKGLRSCHTGVNRNVGYK-VPLTILMKRAVFPKMNDHSISPKENELRALSSFFSKSC 247
           +  + G   C  G      YK VPLT L K      +N++     EN +      F+ S 
Sbjct: 134 MGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQLINNNHAMKPENWIIGCVLLFAGSS 193

Query: 248 IVGKWSP-DPKTNSAWKGQYS 307
             G W     K N  +  QYS
Sbjct: 194 CFGSWMLIQAKVNEKYPCQYS 214


>At3g03330.1 68416.m00331 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 328

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 433 KYNFSESDLAVVMSQTFQRSRVTAKVVWV 347
           K+ F++ D  ++  +  +R  +  KVVW+
Sbjct: 20  KFAFADGDFTLISKKHVKREAIQGKVVWI 48


>At5g26720.1 68418.m03167 expressed protein 
          Length = 134

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 236 SKSCIVGKWSPDPKTNSAWKGQYSQLCSMCQHPDKCDYPDDFS 364
           SK+  +GK+   PK+   W G     C     P + +  DD S
Sbjct: 55  SKNRFLGKFRKKPKSPKRWSGSRKGGCFRVMRPRRREGGDDDS 97


>At5g22080.1 68418.m02571 DNAJ heat shock N-terminal
           domain-containing protein similar to J-domain protein
           Jiv [Bos taurus] GI:15777193; contains Pfam profile
           PF00226 DnaJ domain
          Length = 246

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 200 KENEL-RALSSFFSKSCIVGKWSPDPKTNSAWKGQYSQLCSMCQHPDKCDYPDDFSGYTG 376
           ++NE+ R LS F          S D  T+   K QY ++ S+  HPDKC +P     + G
Sbjct: 24  RDNEVGRILSCFKLNPFEHLNLSFDSSTDDV-KRQYRKI-SLMVHPDKCKHPQAQEAF-G 80

Query: 377 AL 382
           AL
Sbjct: 81  AL 82


>At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca(2+)-ATPase, putative
           (ACA12) identical to SP|Q9LY77 Potential
           calcium-transporting ATPase 12, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 12) {Arabidopsis
           thaliana}; similar to SP|Q9LF79 Calcium-transporting
           ATPase 8, plasma membrane-type (EC 3.6.3.8)
           (Ca2+-ATPase, isoform 8) {Arabidopsis thaliana};
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 1033

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 176 MNDHSISPKENELRA--LSSFFSKSCIVGKWSPDPKTNSAWKGQYSQLCSMCQH 331
           M+  S+  K   LR    SS   +S ++ +   D   +  WKG    + +MC H
Sbjct: 533 MDMESVKQKHEVLRVETFSSAKKRSGVLVRRKSDNTVHVHWKGAAEMVLAMCSH 586


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,378,816
Number of Sequences: 28952
Number of extensions: 187410
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)