Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_C05
(391 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 142 7e-35
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 140 2e-34
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 140 2e-34
At3g26180.2 68416.m03267 cytochrome P450 71B20, putative (CYP71B... 33 0.068
At3g26180.1 68416.m03266 cytochrome P450 71B20, putative (CYP71B... 33 0.068
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 29 1.5
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 29 1.5
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 29 1.5
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 29 1.5
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi... 27 4.5
At5g25120.1 68418.m02976 cytochrome P450 family protein CYTOCHRO... 27 5.9
At3g49790.1 68416.m05444 expressed protein predicted protein, Ar... 26 7.8
At2g01720.1 68415.m00100 ribophorin I family protein similar to ... 26 7.8
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 142 bits (344), Expect = 7e-35
Identities = 67/90 (74%), Positives = 78/90 (86%), Gaps = 1/90 (1%)
Frame = +3
Query: 123 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 299
E+KLF RWS DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 300 SLMMHGRNNGKKLMAVRIVXHAFDIIHLLT 389
SLMMHGRNNGKKLMAVRIV HA +IIHLL+
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLS 107
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 140 bits (340), Expect = 2e-34
Identities = 68/96 (70%), Positives = 80/96 (83%), Gaps = 1/96 (1%)
Frame = +3
Query: 105 QPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 281
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 282 VERLTNSLMMHGRNNGKKLMAVRIVXHAFDIIHLLT 389
VERLTNSLMMHGRNNGKKLMAVRIV HA +IIHLL+
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLS 107
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 140 bits (340), Expect = 2e-34
Identities = 68/96 (70%), Positives = 80/96 (83%), Gaps = 1/96 (1%)
Frame = +3
Query: 105 QPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 281
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 282 VERLTNSLMMHGRNNGKKLMAVRIVXHAFDIIHLLT 389
VERLTNSLMMHGRNNGKKLMAVRIV HA +IIHLL+
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLS 107
>At3g26180.2 68416.m03267 cytochrome P450 71B20, putative (CYP71B2)
identical to cytochrome P450 71B20 (SP:Q9LTM3)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 368
Score = 33.1 bits (72), Expect = 0.068
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 218 FCILLFYRNIILQRHVRYLNVITTPSPKKFD-FGNISRLW*WHVVHNHAARVGDFFGPVL 42
FC++ I + +++L PSP KF GN+ ++ + H + + +GPV+
Sbjct: 8 FCLITLASLIFFAKKIKHLKWNLPPSPPKFPVIGNLHQI--GELPHRSLQHLAERYGPVM 65
Query: 41 LSH 33
L H
Sbjct: 66 LLH 68
>At3g26180.1 68416.m03266 cytochrome P450 71B20, putative (CYP71B2)
identical to cytochrome P450 71B20 (SP:Q9LTM3)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 502
Score = 33.1 bits (72), Expect = 0.068
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 218 FCILLFYRNIILQRHVRYLNVITTPSPKKFD-FGNISRLW*WHVVHNHAARVGDFFGPVL 42
FC++ I + +++L PSP KF GN+ ++ + H + + +GPV+
Sbjct: 8 FCLITLASLIFFAKKIKHLKWNLPPSPPKFPVIGNLHQI--GELPHRSLQHLAERYGPVM 65
Query: 41 LSH 33
L H
Sbjct: 66 LLH 68
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 92 VVHNHAARVGDFFGPVLLSHISHFYSQFT 6
++ NH ++G+ + PVL H SH +F+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFS 361
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 92 VVHNHAARVGDFFGPVLLSHISHFYSQFT 6
++ NH ++G+ + PVL H SH +F+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFS 361
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 92 VVHNHAARVGDFFGPVLLSHISHFYSQFT 6
++ NH ++G+ + PVL H SH +F+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFS 361
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 92 VVHNHAARVGDFFGPVLLSHISHFYSQFT 6
++ NH ++G+ + PVL H SH +F+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFS 361
>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 749
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 228 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNG 329
HS+ + + KA P V TNSL + +NNG
Sbjct: 291 HSSAKSSRLPSLKAVSPAVTSATNSLFLDHKNNG 324
>At5g25120.1 68418.m02976 cytochrome P450 family protein CYTOCHROME
P450 71B1 - Thlaspi arvense, EMBL:L24438
Length = 496
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 230 MW*IFCILLFYRNIILQRHVRYLNVITTPSPKKFD-FGNISRLW*WHVVHNHAARVGDFF 54
+W I +F+ II+ R+ R P P + GN+ +L H+ ++ + +
Sbjct: 3 LWYIIVAFVFFSTIIIVRNTRKTKKNLPPGPPRLPIIGNLHQL--GSKPHSSMFKLSEKY 60
Query: 53 GPVL 42
GP++
Sbjct: 61 GPLM 64
>At3g49790.1 68416.m05444 expressed protein predicted protein,
Arabidopsis thaliana
Length = 366
Score = 26.2 bits (55), Expect = 7.8
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 130 LISGISAGCGNGMLXXXXXXXXXXXSVQFSSAIFHTFIRNL 8
LI GI G G+G F+SAI +F RNL
Sbjct: 117 LIRGIDDGSGSGFTDRVMDKLFTKSGSGFASAIVGSFARNL 157
>At2g01720.1 68415.m00100 ribophorin I family protein similar to
SP|P04843 Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 67 kDa subunit precursor (EC
2.4.1.119) (Ribophorin I) {Homo sapiens}; contains Pfam
profile PF04597: Ribophorin I
Length = 464
Score = 26.2 bits (55), Expect = 7.8
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +3
Query: 120 PEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 299
P LFG WS + + L+DY+ +YL + G CP+VE + N
Sbjct: 317 PRYPLFGGWSATFIIGYRVPLEDYLFEASDGRRYLNFTFG-----------CPLVETIVN 365
Query: 300 SL 305
L
Sbjct: 366 KL 367
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,336,915
Number of Sequences: 28952
Number of extensions: 168111
Number of successful extensions: 444
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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