Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C04
         (656 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY129010-1|AAM98753.1|  198|Homo sapiens unknown protein.              33   0.68 
AK055141-1|BAB70862.1|  260|Homo sapiens protein ( Homo sapiens ...    31   3.6  

>AY129010-1|AAM98753.1|  198|Homo sapiens unknown protein.
          Length = 198

 Score = 33.5 bits (73), Expect = 0.68
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 585 PMEIHRTETPPLSDRR*E*IQCHSGCCNRSLSASSWAGSLHSA-SPWAGSFHS 430
           P  +HR+ +PP S ++     CHS   NR    S+ A S   A S W+ + HS
Sbjct: 54  PCSLHRSHSPPWSPQKSHSPLCHSWSRNRLAHGSTRACSSRRAHSSWSQNLHS 106


>AK055141-1|BAB70862.1|  260|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30579 fis, clone BRAWH2006989, weakly similar to
           DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (EC
           2.7.7.6). ).
          Length = 260

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 525 QCHSGCCNRSLSASSWAGSLHSASPWAGSFHSA*SW 418
           Q H+     + + SSW GS    S W GS  +  SW
Sbjct: 24  QGHNSWTGSNRACSSWTGSTRGHSSWTGSSRACSSW 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,555,758
Number of Sequences: 237096
Number of extensions: 1065004
Number of successful extensions: 1915
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)