Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C04
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF077540-1|ABC71801.1|  422|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF025461-3|AAB70998.3|  632|Caenorhabditis elegans Hypothetical ...    28   6.7  
AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical ...    28   6.7  

>AF077540-2|AAC26311.2|  362|Caenorhabditis elegans Hypothetical
           protein T07H3.3a protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 504 YNNPNGIGFTLIGDQIGAASQFGEFPWVVAIMNGRNFSYIGV 629
           +NN  G+     G   G +  FG+F W + I+N + + ++ +
Sbjct: 10  FNNVGGLEEN--GGMTGTSETFGKFKWRLGIINSKGYLWLSL 49


>AF077540-1|ABC71801.1|  422|Caenorhabditis elegans Hypothetical
           protein T07H3.3b protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 504 YNNPNGIGFTLIGDQIGAASQFGEFPWVVAIMNGRNFSYIGV 629
           +NN  G+     G   G +  FG+F W + I+N + + ++ +
Sbjct: 10  FNNVGGLEEN--GGMTGTSETFGKFKWRLGIINSKGYLWLSL 49


>AF025461-3|AAB70998.3|  632|Caenorhabditis elegans Hypothetical
           protein M01D1.2a protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 552 GAASQFGEFPWVVAIMNGRNFSYIGVGV 635
           G +  FG+F W + +M  R   YIGVG+
Sbjct: 272 GNSESFGDFKWRIHLM--RRDDYIGVGI 297


>AF025461-2|ABC71819.1|  670|Caenorhabditis elegans Hypothetical
           protein M01D1.2b protein.
          Length = 670

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 552 GAASQFGEFPWVVAIMNGRNFSYIGVGV 635
           G +  FG+F W + +M  R   YIGVG+
Sbjct: 272 GNSESFGDFKWRIHLM--RRDDYIGVGI 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,333,839
Number of Sequences: 27780
Number of extensions: 153605
Number of successful extensions: 396
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)