Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_C02
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.015
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.74 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    29   0.74 
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    28   0.97 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.97 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   2.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.3  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   2.3  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    27   3.0  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    27   3.0  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   6.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +2

Query: 434 RIPEPP---APISGHGNLLSSVAPPS-QLPNFITAVSPTPANLQNHLPPQDLPATPHPVP 601
           ++P PP   AP++   +  SS APP+   PN +T+ SP   N    +P   +P    PVP
Sbjct: 200 KVPPPPLSQAPVANTSSRPSSFAPPAGHAPN-VTSESPKFPNRGPSIPSASVP----PVP 254

Query: 602 VQPILVQQR 628
               ++QQR
Sbjct: 255 PSSYVLQQR 263



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 446 PPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPI 613
           PP P S    + SS+ PP+Q P       P+  +L + +PP      P P+   P+
Sbjct: 158 PPIP-SKAPPIPSSLPPPAQ-PAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPV 211


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +2

Query: 440  PEPPAPISGHGNLLSSVAPPSQLPNFI----TAVSPTPANLQNHLPPQDLPATPHPVPVQ 607
            P PPAP+S     + +V  PS +P+      ++V+P  A   + LPP        P P  
Sbjct: 1476 PAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAP-SSTLPPSQSSFAHVPSPAP 1534

Query: 608  P 610
            P
Sbjct: 1535 P 1535



 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +2

Query: 428  KTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSP-TPANLQNHLPPQDLPATPHPVPV 604
            K   P  P   S H      V PP+ + + +  V P  P  + N   P   PA P PV  
Sbjct: 1429 KASQPTNPGAPSNHA---PQVVPPAPM-HAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQ 1484

Query: 605  QP 610
             P
Sbjct: 1485 LP 1486


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 461 SGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPP-QDLPATPHPVPVQ 607
           S HG+L S    P+   N  +  +PT  + + + PP    P  P P  VQ
Sbjct: 322 SMHGSLHSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQ 371


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 451 WRFRNPRLFIRTHVELYFIFHFTSLLMRMATCDMYTIPPMSSR 323
           W F+NP+ F+RT   L+   H   + +  AT +++ I  + +R
Sbjct: 344 WEFKNPQPFLRTREFLWQEGHTAHMTLEGATEEVHQILDLYAR 386


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 479  LSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVP 601
            LSS APP  LP+      P P+      PP  +P +  PVP
Sbjct: 1017 LSSKAPPVPLPSADAPPIPVPST----APPVPIPTSTPPVP 1053



 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/55 (29%), Positives = 19/55 (34%)
 Frame = +2

Query: 446  PPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQP 610
            PP P S  G    S  PP   P+      P P+       P  +P  P P    P
Sbjct: 1050 PPVPKSSSG--APSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAP 1102


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 23/62 (37%), Positives = 26/62 (41%)
 Frame = +2

Query: 440 PEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPILV 619
           P PP P   +    SS APP Q     TA  P  A    + P Q  P  P     QPI+V
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQ--TAYPPQQA---PYPPVQAYPQAPQ----QPIVV 256

Query: 620 QQ 625
            Q
Sbjct: 257 AQ 258


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +2

Query: 416 SSDKKTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHP 595
           SS   +  P PP  I G      ++ P        T   PTP +L    PP   P+ P  
Sbjct: 381 SSRAVSNPPAPPPAIPGRS--APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS 438

Query: 596 VPV 604
           +P+
Sbjct: 439 LPM 441



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 446 PPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPAT 586
           PP P   +G + S   PP+  P  I  VS  PA      PP   P++
Sbjct: 254 PPIPPPSNGTVSS---PPNSPPRPIAPVSMNPAINSTSKPPLPPPSS 297



 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 521 TAVSPTPANLQNHLPPQDLP--ATPHPVPVQP 610
           T+  P P ++ +  PP+ +P  + P P P+ P
Sbjct: 227 TSAPPIPPSIPSSRPPERVPSLSAPAPPPIPP 258



 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 440 PEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPP 568
           P P AP+S +  + S+  PP   P+   + +   AN +   PP
Sbjct: 272 PRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPP 314


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 434 RIPEPPAPISGH-GNLLSSVAPPSQLPNFITAVSPTPAN 547
           +IP PP P+     N  SS +PP+   NF+ +  P PAN
Sbjct: 354 QIP-PPKPMQKFPANAASSESPPNATGNFLPS-GPVPAN 390


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 362 RHSHKK*SEVKYKV*FNMSSDKKTRIPEPPAPISGHGNLLSSVAPP 499
           +H+    S+V+YKV  NM S+    +P    P + +   L +V PP
Sbjct: 798 KHAEIMFSDVQYKVFINMMSNILPTLPVAEIPFT-YQQFLDAVKPP 842


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 476 LLSSVAPPS-QLPNFITAVSPTPANLQNHLPPQDLPATP 589
           L +SV+ PS Q+ N   A + TP +    +PP  +PA P
Sbjct: 239 LSNSVSSPSIQVSNNQNANNSTPLSFHAPIPPLHVPAVP 277


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 500 SQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPI 613
           SQL   +      PA + NHLPP     T    PV P+
Sbjct: 114 SQLLGSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPV 151


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = +2

Query: 461 SGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQP 610
           S     L++ +PP Q+P     V   P  L   L     P +  P P  P
Sbjct: 272 SNQSRTLTTASPPEQIPLMEPQVYVNPQVLPGRLSSLSKPVSLPPTPSSP 321


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 95  WWWFCTQ*YKITQLIRKVWLNNFNRT 172
           WW    Q YKI Q+  ++W N   +T
Sbjct: 412 WWDLGNQVYKIRQMFLELWNNTAIQT 437


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +1

Query: 85  FIFVVVVLHAII 120
           FIFVV+VLHA++
Sbjct: 190 FIFVVIVLHAVL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,395
Number of Sequences: 5004
Number of extensions: 55624
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)