Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B24
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 32 0.049
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 28 1.1
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 27 1.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 4.3
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 4.3
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 5.7
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.5
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 25 9.9
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 25 9.9
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 9.9
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 9.9
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 9.9
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 25 9.9
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 32.3 bits (70), Expect = 0.049
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +1
Query: 76 DTKITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEY 255
D KI W+ V+ YES+ + L G L+ ++ T C I G P+ R+ Y
Sbjct: 66 DIKIMSSEWIPVL-YESWVQGEDLDDGLLVDKHFLPTLFKCRVCLTNI-GQPERSRIENY 123
Query: 256 NTTNNGPDCMKGTKDCAH 309
+ G C T+D H
Sbjct: 124 VLKHGGTFCPDLTRDVTH 141
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 127 FDHMKLLCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRL 246
FDH K G K ++ HC+ + I G +NVR+
Sbjct: 280 FDHSKKKVIGRFQGVKGAPSSIHCLGNVVAITGLDRNVRI 319
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -1
Query: 216 QDCSSDTVCSSEHVLRTDE*ATA*QLHMIKTLIFDHHKPWILGDFCVISTDNFINNGVF 40
Q C S SS+ +L ++ A Q+H + + D ++ + D V S ++F+NN F
Sbjct: 108 QSCKSACENSSQSLLNVEQ-QYAQQVHFWEKIRTDIYREGLRSDAAVKSLNDFVNNVSF 165
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 351 WMWNSFFYRSSNNGMCT 301
WMWNSF S NG T
Sbjct: 421 WMWNSFRGASDENGEVT 437
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 227 RRRMCV*ESIIQQTMVRTA*KVPKTVHIP 313
R+ CV ESI ++ T K+P T H+P
Sbjct: 31 RKSRCVVESIGNPCLLCTQLKIPCTYHLP 59
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/48 (20%), Positives = 25/48 (52%)
Frame = -2
Query: 170 ELMSEPPHSSFI*SKLSYSITTSHGYWVIFVSFPPTILLTTVSSTPQH 27
E +S+ S + K+ T+HG W ++ P ++ ++ ++ P++
Sbjct: 469 EKLSQWYKSDTLLGKIDKEADTNHGTWNFLLNLPLSLTISHITPLPEN 516
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 7.5
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = -1
Query: 366 VGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIILS*THILRRSFNQ----DCSSD 199
+G + WN ++Y+ +N +FG ++ +I+ T + S + + SSD
Sbjct: 253 LGFFVVFWNPYWYKMMDNPSWELFGRDQYIQCQALYLIIRLTCLYLLSCYESEILNLSSD 312
Query: 198 TVCSSEHVLR 169
T S+ +LR
Sbjct: 313 TNLESDFLLR 322
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 435 YKICIRCCYHQPNKRNVMSALHIVGDVIWMWNSFFY 328
Y I RC + + + + IVG W+W+S F+
Sbjct: 124 YHIMRRCIPDEHPAKRLCLSWAIVGMNAWVWSSVFH 159
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 293 VPFM-QSGPLFVVLYSPKRTFFGVPSI 216
VP++ + G F VLYSP+ T P++
Sbjct: 239 VPYLTEIGQSFAVLYSPELTSLNFPNL 265
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 528 ELLVHSPTGDVHFKICRGL 472
ELL+ G+ H+ +CRGL
Sbjct: 1701 ELLLRMEDGNYHWHLCRGL 1719
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 384 MSALHIVGDVIWMWNSFFY 328
M A +V D W W FF+
Sbjct: 259 MDAHRVVRDYAWYWGDFFF 277
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 228 RSFNQDCSSDTVCSSEHVLRT 166
RSF Q CS++ +CS+E R+
Sbjct: 472 RSFFQKCSAEFLCSNEPNFRS 492
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 123 LIFDHHKPWILGDFCVISTDNFINNGVFDSTTLVVA 16
L+F + KP + CV+ST NF N +F+ + + +
Sbjct: 130 LVFGNLKP----NVCVVSTPNFEFNTIFEKLSTLTS 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,080
Number of Sequences: 5004
Number of extensions: 60256
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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