Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B24
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381...    32   0.35 
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116...    28   4.4  
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760     28   4.4  
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    28   5.8  
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    28   5.8  
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654...    27   7.6  
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    27   7.6  
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    27   7.6  

>10_01_0345 -
           3811057-3811236,3811342-3811615,3811732-3812289,
           3812602-3812747,3812930-3813097,3813896-3814003,
           3814859-3815029,3816557-3816949,3817522-3817617,
           3817715-3817774,3818600-3818744,3819296-3819520,
           3820106-3820254
          Length = 890

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 145 LCGGSLISSKYVLTAAHCVTGAILIEGTPKNVRLGEYNTTNNGPDCMK 288
           +C     + +Y  + A C     L+E  P+ +  G+Y +T   PDC K
Sbjct: 416 VCSQLFTTHQYTFSIACCFCNDYLLETRPERLGQGQYKSTLVCPDCKK 463


>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
            20712000-20712293,20712603-20712728,20712827-20712896,
            20712992-20713182,20713394-20713519,20713878-20714279,
            20714364-20714758,20714861-20715315,20715403-20715524,
            20715653-20715693,20716026-20716129,20716363-20716576,
            20717667-20717780,20718576-20718612
          Length = 1046

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 506  LATYISKSAGGCCV*SKDGKQMGRTKSVYGAVTISLISAMSCLPC-TSLGM*SGCGIVFS 330
            +  ++ +  GG  V +K GK+ GR  ++       + +A  CLPC TSL   S       
Sbjct: 894  ITVFVVEKTGGLRVFTKYGKEYGR-NAIQVLFDGCMKAASGCLPCKTSLPRESASAWWTQ 952

Query: 329  IGAVT-TGCAQS 297
            +  V+  GC +S
Sbjct: 953  VDTVSGQGCGES 964


>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
          Length = 184

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = -2

Query: 344 GIVFSIGAVTTGCAQSLVPFMQSGPLFVVLYSPKRTFFGVPSIKIAPVTQCAAVSTYFEL 165
           G + ++ A T     + +P      L +  Y  +     VPS  I     C  V   F  
Sbjct: 58  GSITTVIATTVYLVWAYMPERCLRSLGITYYPSRYWALAVPSFVIVATALCMVVYVGFNF 117

Query: 164 MSEPPHSSF 138
           ++ PP +SF
Sbjct: 118 LATPPPTSF 126


>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 369 IVGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIILS*THILRRSFNQDCSSDTVC 190
           +VGDV W ++ F   +S  G C  FG+F  +  ++   +      LR   +QD   ++  
Sbjct: 192 LVGDVPWKYSKFLEINSIPGSCH-FGSFCCIFALIISRLNKPFLFLRTDKHQDLLDESQI 250

Query: 189 SS 184
           S+
Sbjct: 251 SA 252


>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 292 TKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALI 399
           TK C   V TAPI KTI +  Y   D  G+ D+ L+
Sbjct: 427 TKHCTRAVYTAPI-KTISNQKY--RDFCGKFDVGLL 459


>12_02_1157 +
           26565040-26565081,26565189-26565262,26565343-26565460,
           26565547-26565617,26565704-26565869,26565946-26566145,
           26566669-26566880,26567404-26567522,26567952-26568053,
           26568144-26568253,26568340-26568427,26568574-26568606,
           26568635-26568834,26568916-26569120
          Length = 579

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 554 VLDKPVPDMN-CLYIPXLATYISKS 483
           VL  PVP  N CL+IP +A Y SK+
Sbjct: 418 VLYSPVPFQNGCLHIPEVALYNSKA 442


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 141 AAMRW-LTHQFEVRAHCCTLC 200
           AA+RW LTH  E  A CC  C
Sbjct: 264 AAVRWGLTHHKESAADCCQAC 284


>01_06_0946 +
           33220910-33222221,33223373-33223734,33223863-33224073,
           33224174-33224411,33224492-33224642,33224733-33224997,
           33231775-33231820,33232167-33232815,33232883-33233384,
           33235023-33235360,33235466-33235676,33235769-33235992,
           33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 76  DTKITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTAAHCVTGAIL-IEGTPKN 237
           D  + +Y WL+  E  S D +  L GGS   S+ +     C+  A+L +E  P+N
Sbjct: 752 DLNLLRYSWLLWKEGRSVDLLDQLLGGSFDYSEVL----RCIQVALLCVEVQPRN 802


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,779,576
Number of Sequences: 37544
Number of extensions: 403886
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)