Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B24
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family prote...    29   2.1  
At1g28520.1 68414.m03506 expressed protein                             29   2.1  
At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family prote...    29   2.8  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    28   4.8  
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati...    27   6.4  
At4g33380.1 68417.m04745 expressed protein                             27   6.4  
At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family...    27   8.4  
At2g47310.1 68415.m05906 flowering time control protein-related ...    27   8.4  

>At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 263

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 85  ITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 189
           I  YP  +VIE E  DHM + C   L+S   +  A
Sbjct: 225 IHNYPANLVIEMEETDHMPMFCKPQLLSDHLLAIA 259


>At1g28520.1 68414.m03506 expressed protein
          Length = 486

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 205 GAILIEGTPKNVRLGEYNTTNNGPDCMKGTKDCAHPVVTAPIEKTI 342
           G +  E  P+N      NTTNN   C+KG    +  V T  ++ T+
Sbjct: 419 GRLTAEFPPEN---NTTNTTNNNKRCIKGRPKVSTKVATGNVQNTV 461


>At2g23590.1 68415.m02815 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 272

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 85  ITQYPWLVVIEYESFDHMKLLCGGSLISSKYVLTA 189
           I  YP  +VIE E  DH+ L C   L+S   +  A
Sbjct: 234 IDNYPPNLVIEMEGTDHLPLFCKPQLLSDHLLAIA 268


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
           to SP|P35207 Antiviral protein SKI2 {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 1347

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 292 TKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALI 399
           TK C   V TAPI KTI +  Y   D  G+ D+ L+
Sbjct: 391 TKHCTRAVYTAPI-KTISNQKY--RDFCGKFDVGLL 423


>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650207]
           [PMID: 11247608] Contains Pfam domain PF00432:
           Prenyltransferase and squalene oxidase repeat
          Length = 758

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 396 KRNVMSALHIVGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIV 265
           KR +  A   + D+  +  S++    N G+C ++GTF AVR +V
Sbjct: 586 KRFITKAAKYIEDMQTVDGSWY---GNWGVCFIYGTFFAVRGLV 626


>At4g33380.1 68417.m04745 expressed protein
          Length = 328

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 141 AAMRW-LTHQFEVRAHCCTLC 200
           AA+RW LTH  E  A CC  C
Sbjct: 229 AAVRWGLTHHKESAADCCQAC 249


>At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family
           protein
          Length = 532

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -2

Query: 233 FGVPSIKIAPVTQCAAVSTYFELMSEPPHSSFI*SKLSYSITTSHGYWVIFVSFPP 66
           +GVP+   +P T  +  S  ++   E  H S+  S +SY   T++G +   V+ PP
Sbjct: 460 YGVPAYTTSPPTIYSNRSPPYQYSPEAVHGSYQTSPVSY--PTAYGTYCSPVAAPP 513


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 38/143 (26%), Positives = 52/143 (36%), Gaps = 13/143 (9%)
 Frame = +1

Query: 118 YESFDHMKLLCGGSLIS---SKYVLTAAHCVTGAILIEGT----------PKNVRLGEYN 258
           Y + D MK+  G + +     +  L A   + G   I G+          PK  RLGE  
Sbjct: 237 YMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPKKPRLGEQR 296

Query: 259 TTNNGPDCMKGTKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALIRLMVTAPYTDFVR 438
           +T N P  M+      H       E   P P   P  VQ  HD +          T  V 
Sbjct: 297 STFNTPPAMQHFDPNWHSQPYPQWENKEPAP---PRVVQ-HHDFSSQPNHFPHQNTQAVS 352

Query: 439 PICLPSLDYTQQPPADFEMYVAS 507
            +  P   +   PPA+FE +  S
Sbjct: 353 EVHKPL--HQDIPPANFEKHQKS 373


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,707
Number of Sequences: 28952
Number of extensions: 320404
Number of successful extensions: 796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)