Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B23
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    31   0.53 
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00...    31   0.70 
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    29   2.8  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   3.7  
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ...    28   6.5  
At4g22320.1 68417.m03227 expressed protein                             28   6.5  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   6.5  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    28   6.5  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   8.6  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   8.6  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 571 TMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 666
           T+QR+ + E+ K+    C++P +PT +FT  K
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFTYTK 553


>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 568

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 532 LRFIALKCKTVFFTMQRLLIMEL*KRKSSMCITPTIPTLSFTIMK 666
           L F+  + K V  T+QRL + E+ K+    C+ P  P+ +FT M+
Sbjct: 507 LAFVWKETKVVI-TLQRLNLTEILKKGLGSCVPPLPPSKNFTYMR 550


>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
 Frame = +3

Query: 108 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPK 281
           E+ +K+L+  Q   +DQ+   D+  K+G  Y  EA IDN       ++   +        
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141

Query: 282 YYEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFL 425
             EF +F Q     +  +F +F   ++   F +   +  + L E  +L
Sbjct: 142 ALEFRLFRQHGFNVSEDVFDVF--MENCGKFDRDDIYGLISLYEASYL 187


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 156 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 266
           N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
           SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
           Zea mays
          Length = 472

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 489 YEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANY 638
           Y++  +F V     +  YR K+   +    ++ N  +VK E+  VY ANY
Sbjct: 188 YKMAEEFLVTSHGNILDYRLKLNQVVREVQQSRNGVVVKTEDGSVYEANY 237


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 84  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 245
           K V    +E QKK ++  ++ D++  DD   KI +D  VE   D     K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 33  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 185
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 395 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 249
           S SG ++E  +KV +++E   K   +   +  E+G++++L K  DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 290 LIVLGKITDSVQFQEFFNSFLIGVVI 213
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 290 LIVLGKITDSVQFQEFFNSFLIGVVI 213
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,226,127
Number of Sequences: 28952
Number of extensions: 287510
Number of successful extensions: 782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)