Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B22
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    28   0.44 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   3.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   5.5  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.2  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    24   7.2  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    24   9.6  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    24   9.6  
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    24   9.6  

>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 364 RAAHSFTPVD-DNHTLISNLYPVIVHK 287
           R AH +T  D ++H+L  N+Y V VH+
Sbjct: 401 RFAHGYTEADGESHSLPENVYSVFVHQ 427


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 352 SFTPVDDNHTLISNLYPVIVHKHRVGGSFSHLHHEGF 242
           S  P+  N T++ N Y ++  KH    +F H H E +
Sbjct: 328 SDNPITANSTIL-NYYDIVTIKHMGTNAFLHSHPEKY 363


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 165 DLWKTAAVRAYTNMPPLMRSLN 100
           DL     V  Y+N+PP +R+LN
Sbjct: 896 DLIDLLYVNGYSNLPPFVRALN 917


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 192 AGRVIPTQSDLWKTAAVRAYTNMPPLMRSL 103
           + +V  T  + W   A   YTN+ PLM +L
Sbjct: 259 SAQVSGTTGEYWFRFATAGYTNLNPLMFAL 288


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 154 LPQV*LRRYYSTRS 195
           +PQ  LRRYYSTR+
Sbjct: 147 VPQKSLRRYYSTRT 160


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 315 LIRVWLSSTGVKECAAR 365
           LIR+W S TG K C  R
Sbjct: 199 LIRIWNSETGEKICEFR 215


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
 Frame = +1

Query: 76  LLHQNCLLVKGTH*RGHVRICSHC----------CSLPQV*LRRYYST 189
           +L    L+VK  H R H  +  HC          C+LPQ+ L  YY T
Sbjct: 320 ILQGAVLIVKTVHFR-HAHVLVHCSDGWDRTSQLCALPQLCLDPYYRT 366


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +2

Query: 17  LQMEQAVKVFRILYFAKDYDYFIKTACWLRERINGGMFVYALTAAVFHRSDCVGITLPAP 196
           +Q  Q +K  R+L   K     I+       +   G  +  + AA  + SD +  T   P
Sbjct: 1   MQYYQMMKALRMLKKPKPGCLGIEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFP 60

Query: 197 YEIYP 211
           Y +YP
Sbjct: 61  YTVYP 65


>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 352 SFTPVDDNHTLISNLYPVIVHKHRV 278
           S T +  N  L+ N Y V++  HR+
Sbjct: 97  SLTQMTGNEPLLKNFYNVLLDNHRL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,210
Number of Sequences: 5004
Number of extensions: 27590
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)