Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B22
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0249 - 1644280-1645161,1645328-1645432,1646322-1646805,164... 33 0.060
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241... 30 0.56
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537... 30 0.74
03_05_1136 + 30634685-30634919,30635008-30635303,30635398-306357... 29 1.3
08_01_0578 + 5139324-5140190 27 3.9
05_03_0474 + 14481063-14481403,14481597-14481710,14483428-144836... 27 5.2
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 27 5.2
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 27 6.9
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 27 6.9
>02_01_0249 -
1644280-1645161,1645328-1645432,1646322-1646805,
1647680-1647884,1648538-1648808
Length = 648
Score = 33.5 bits (73), Expect = 0.060
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 205 NLVRSG*SNTDAVRPVEDCSSESIYEHAPVNAFP*P-ASSFDEVVIVLGEVQYAENFNGL 29
+L G + D +R D ++E ++ AP F A FD V+V+GE YAE
Sbjct: 481 DLTAGGTTILDGIRRAVDAATEVVFAEAPDAGFMRRNAGRFDAAVVVVGEPPYAETLGDN 540
Query: 28 FHL 20
+L
Sbjct: 541 LNL 543
>05_05_0051 +
21923402-21923763,21923861-21923951,21924048-21924196,
21924279-21924522,21924664-21924768,21924842-21925024,
21925118-21925319,21925896-21926372,21926680-21926771,
21927265-21927444
Length = 694
Score = 30.3 bits (65), Expect = 0.56
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 175 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 44
+A++ +E +YE P A F V+V+GEV YAE
Sbjct: 451 EAIKESVGAETEVVYEECPTEATV-ETGEFSYAVVVVGEVPYAE 493
>03_05_1137 +
30652967-30653183,30653281-30653485,30653696-30653786,
30653904-30654046,30654186-30654429,30654536-30654640,
30654985-30655167,30655255-30655459,30655552-30656036
Length = 625
Score = 29.9 bits (64), Expect = 0.74
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -3
Query: 205 NLVRSG*SNTDAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAENFNGLF 26
N + +G + A++ D S+ +Y P ++ +D ++V+GE YAE F
Sbjct: 460 NNITAGTTILSAIKATVDPSTTVVYSENPDSSVV-TGDKYDYAIVVVGEPPYAEGFGDNL 518
Query: 25 HL 20
+L
Sbjct: 519 NL 520
>03_05_1136 +
30634685-30634919,30635008-30635303,30635398-30635790,
30635856-30636348,30636422-30636918
Length = 637
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 205 NLVRSG*SNTDAVRPVEDCSSESIY-EHAPVNAFP*PASSFDEVVIVLGEVQYAE 44
N V +G + +A++ D S+ Y EH ++ A +D V+V+GE YAE
Sbjct: 468 NNVTAGTTILEAIKAAVDESTVIDYTEHPDKSSIAESAKEYDYAVVVVGEEPYAE 522
>08_01_0578 + 5139324-5140190
Length = 288
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 385 ILVVFR*RAAHSFTPVDDNHTLISNLYPVIVHKHRV 278
+LV AH P D+N+ ++S ++ + +HRV
Sbjct: 207 VLVSRAQHGAHHRAPYDNNYCIVSGMWNATLDRHRV 242
>05_03_0474 +
14481063-14481403,14481597-14481710,14483428-14483676,
14485844-14486225
Length = 361
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 152 VFHRSDCVGITLPAPYEIYPYFFVDSHVINK 244
VFHR+ + + Y+ P FF DS+ +N+
Sbjct: 256 VFHRAQGIQLCNIQAYQCTPAFFADSYQLNQ 286
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 313 NLYPVIVHKHRVGGSFSHLHHEGFVDDMGVYKEVR 209
N++P + + +VG + H + F DD YK +R
Sbjct: 69 NIFPPVATEGKVGEYWYHEDSQAFFDDAEHYKMIR 103
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 343 PVDDNHTLISNLYPVIVHKHRVGGSFSHLHHEGFVDDMGVY 221
P D+ ++ L+ + H G+ HLHH+G D+G++
Sbjct: 630 PHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGKF-DLGIH 669
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 287 LMNYYGIQVTDKSMVVIDWRKGVRRS 364
LM+ G+Q SMV++ W K +R+S
Sbjct: 1268 LMSLSGVQRQVASMVIVSWFKDLRKS 1293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,164,427
Number of Sequences: 37544
Number of extensions: 188496
Number of successful extensions: 456
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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