Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B22
         (387 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)                    30   0.76 
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_35781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  27   4.0  
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)          26   9.3  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        26   9.3  
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  

>SB_28936| Best HMM Match : PAPA-1 (HMM E-Value=8.6)
          Length = 339

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 235 DMGVYKEVRVNLVRSG*SNTDAVRPVEDCSSESIY 131
           +MG    V+ N +RSG  +TD   PV    S+S+Y
Sbjct: 151 NMGWASNVKDNWIRSGDYHTDTAHPVNITDSQSLY 185


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 197  YEIYPYFFVDSHVINKAFMMKMTK 268
            +++YP F++D+H+ NKA +  + K
Sbjct: 1787 HDVYPQFYLDTHLTNKAVLEAVDK 1810


>SB_35781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -3

Query: 340 VDDNHTLISNLYPVIVHKHRVGGSFSHLHHEGFVDDMGVYKEVRVNLVRSG*SNTDAVRP 161
           VD N T IS+L      KH +GG   HL+H  F +  G Y+   +N+ R    N   + P
Sbjct: 345 VDGNETSISSL------KH-IGGEAIHLYHLLFDNVCGPYRGKGLNISREEFKNGFTLFP 397

Query: 160 VE 155
            +
Sbjct: 398 FD 399


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 244 SLHDEDD*SCHRPCAYEL 297
           ++HD+DD  C R CA+ L
Sbjct: 117 TIHDDDDAECRRCCAFNL 134


>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
          Length = 1515

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = -1

Query: 324  LLSVTCIP**FISTGSVAALVIFIMKALLMTWESTKK*G*ISYGAGRVIPTQSDLWKTAA 145
            LL+V  I    ++TG++ A     +  L +T+ + +      +G  +    ++D+  T  
Sbjct: 1250 LLTVLSIA--MVATGALLASQDAALAGLSLTF-AMESLDATQFGVRQCSEVENDMTSTER 1306

Query: 144  VRAYTNMPP 118
            V +YTN+PP
Sbjct: 1307 VLSYTNLPP 1315


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 89  TACWLRERINGGMFVYALTAAVFHRS 166
           TAC+  + I+GG+ V++   + FHR+
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHRA 861


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 361 AAH-SFTPVDDNHTLISNLYPVIVHKH 284
           A H S T +   HT+I +L+P ++H H
Sbjct: 5   AVHRSSTNIHHLHTIIIHLHPTVIHLH 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,843,432
Number of Sequences: 59808
Number of extensions: 217441
Number of successful extensions: 478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)