Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B22
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23523-5|AAC46556.1|   77|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF036704-1|AAB88560.2|  293|Caenorhabditis elegans Hypothetical ...    26   8.1  

>U23523-5|AAC46556.1|   77|Caenorhabditis elegans Hypothetical
           protein F53A9.1 protein.
          Length = 77

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -3

Query: 304 PVIVHKHRVGGSFS--HLHHEGFVDDMG 227
           P  VH H  GG     H HH GF+ ++G
Sbjct: 31  PQTVHVHTDGGHHHGHHHHHHGFLHELG 58


>U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical
           protein F44A2.3 protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 179 ITLPAPYEIYPYFFVDSHVINKAFMMKMTKAATDPVLMNYYGIQVTDKSMVV 334
           + +PA  + +    VD+H    +   + +  A +P   N + I+VTD   VV
Sbjct: 58  VNIPATRQCFTEGCVDAHSFRMSSFRQPSFVAFEPHFPNKFRIRVTDFDFVV 109


>AF036704-1|AAB88560.2|  293|Caenorhabditis elegans Hypothetical
           protein ZK185.3 protein.
          Length = 293

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +2

Query: 20  QMEQAVKVFRILYFAKDYDYFIKTACWLRERING--GMFVYALTAAVFHRSDCVGITLPA 193
           + E  + +      AK  + ++ T C +RE  N     F   +T     +    GITLP 
Sbjct: 101 EFENIILLVASTELAKLANKYLTTCCNIRENYNVPCNNFYLPITVCPEIQEKVDGITLPV 160

Query: 194 PYEIYPYFFVDSHVINKAF 250
            + I      D+ ++N  +
Sbjct: 161 SFSIGSTRLEDAEIVNSTW 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,497,174
Number of Sequences: 27780
Number of extensions: 154791
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)