Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B21
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    28   1.3  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    26   3.9  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   6.8  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   6.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   6.8  
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    25   9.0  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.0  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   9.0  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -3

Query: 366 RSSNVYPMIDCSFYPMSSLELYRNLLCRTSQSLSIGLR---LVQNSESAKFRHQLDDQRW 196
           R++  YP    S Y  SSL++Y +    T + +S+        Q  +   FR +LD   W
Sbjct: 480 RATTYYPSSVTSHYINSSLKIYGSNEFETPEMISMAYEDGAYSQIEDMRNFRSRLDHSTW 539

Query: 195 RML 187
           + +
Sbjct: 540 KSI 542


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 399 PLPLHPD*SRFRSSNVYPMIDCSFY-PMSSLELYRNLLCRTSQSLSIGLRLVQNSESAKF 223
           PLPL+ D S      VY +ID  F+ P  SL +  +LL   S ++S  L + +  +  KF
Sbjct: 56  PLPLNFDISVHLMPTVYTLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWVEKCYQMNKF 115


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 270 DFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEAG 395
           D   F   D   +L TT  KRN   WD+   +    ++D +G
Sbjct: 606 DMTDFSASDDDPVLITTKIKRNANIWDLQKHLAGLLNRDTSG 647


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 109 PYGSNLLILKSHHYRIR 159
           PY SNLL+L + HY ++
Sbjct: 148 PYISNLLVLLTKHYHVK 164


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 357  NVYPMIDCSFYPMSSLELYR 298
            N+YP+ID S Y +S+   Y+
Sbjct: 954  NIYPVIDDSIYELSAASKYQ 973


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 168 TKARVHPAFANAGRQAGVEIWRIQNFEPVAVQSKDFGK--FYKGDSYIILKTTSDKRNNL 341
           +K R+   F +        +W ++  +PV  + +D GK  F       IL     +R NL
Sbjct: 102 SKLRLENCFISGSWDKSFRVWDVRVKQPV--EGQDIGKKIFASSSRDNILVLGCSERENL 159

Query: 342 SWDI 353
            +DI
Sbjct: 160 VYDI 163


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 369 FRSSNVYPMIDCSFYPMSSLELYRNLLCRTSQSLSIGLRLVQN 241
           F   N+ P+   +   ++SLEL  +LLC    S S  L+ V N
Sbjct: 140 FAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLN 182


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 415 SASMTSSVERRYNTARLWATRVTTSYSTSHLHYNTWMG 528
           +  ++S    + N   L ++ + TSYS S + Y++W G
Sbjct: 48  NTDLSSQFFEQTNNGSL-SSLIDTSYSNSQICYSSWQG 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,129
Number of Sequences: 5004
Number of extensions: 59227
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)