Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B19
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281 29 3.2
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 28 5.6
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316... 27 7.4
07_03_1700 - 28810239-28810870,28811304-28812594 27 9.8
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 9.8
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 27 9.8
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 27 9.8
>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
Length = 518
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 351 NRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLS 482
NR+ R L++ +++ E I + CMKK+ ++N L +S
Sbjct: 39 NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 296 TVLLRSSLRCVDCSCPAFERMG 231
TVLL +S + C C FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409
>10_08_0355 -
17131178-17131268,17131376-17131429,17131521-17131663,
17131812-17132096,17132168-17132301,17132383-17132556,
17132639-17132707,17132814-17132878,17133441-17133589,
17133747-17133989,17134119-17134255,17134340-17134561,
17134661-17134827,17136680-17136819
Length = 690
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 254 NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 340
NYN+ V KN+ A+R DIF KT + +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552
>07_03_1700 - 28810239-28810870,28811304-28812594
Length = 640
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 250 GQLQSTQRKELRSNTVLGHF*KDFRTVPTERQI 348
G+L S Q LRSN + G D T+P+ R I
Sbjct: 94 GKLDSLQVLSLRSNRLAGSLPSDVTTLPSLRSI 126
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 141 VLQTAWVPYLNSLGTRLLRLVTI 209
+L A+VPYL L + LRLVTI
Sbjct: 1359 MLGKAFVPYLEGLNSTQLRLVTI 1381
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 141 VLQTAWVPYLNSLGTRLLRLVTI 209
+L A+VPYL L + LRLVTI
Sbjct: 1315 MLGKAFVPYLEGLNSTQLRLVTI 1337
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 27.1 bits (57), Expect = 9.8
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Frame = +2
Query: 8 SYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIP-EFSWY 184
S Y + +P WW +E N EIY + Y++RL G+ E +
Sbjct: 286 SSYIWRRGTIPIWWGAE-IKNAVSVEAEIYVADDPFNGSLQYYQRLGRRYGNKSLEVNAT 344
Query: 185 SPIKTGYYPLMTSYYFPFAQ-RPDNYNLHSVK-NYEAIRFLDIFEKTFVQ 328
S K G P++ + +P+ + S K + E +R KT++Q
Sbjct: 345 SQKKPGVVPIVCVNLLRYGDGKPETVLVDSFKSSLEYLRSTKKLGKTWIQ 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,584,247
Number of Sequences: 37544
Number of extensions: 282404
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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