Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B19
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012)                 30   1.4  
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   2.5  
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   2.5  
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              27   7.6  

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 197  TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 367
            T Y P  T S Y      Q+P+N++LH     +A+        T    L  GKF+S G+ 
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770

Query: 368  IDFHD 382
             D H+
Sbjct: 4771 RDVHE 4775


>SB_28966| Best HMM Match : Kinesin (HMM E-Value=0.012)
          Length = 89

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 21  TSTRTCLSGGVLRDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLGTRLLR 197
           T TR      + + +VTL I ++     S N+ +H    +  +  +VPY +S+ T LL+
Sbjct: 17  TGTRLKEGSNINKSLVTLGIVISTLAENSLNSYEHTKKLAYRKKLFVPYRDSVLTFLLK 75


>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 389 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 258
           P H  NQ  C    IC+  G   KS  KCP    L  S  RC  C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +2

Query: 332  LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 463
            L+KGKF+     S  K ID   E+   F+G+ W ++ DL  +++E  K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 72  LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 197
           + +A AKYI +S +  + VI + S    + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207


>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
 Frame = +2

Query: 50  SSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 229
           S ER     ++RG  Y   Y++   R Y      G     E  +    K GY       Y
Sbjct: 124 SYERSYERSYKRG--YERSYERSYERGYKRSYERGNKRSYERGYKRGYKRGYERGYERSY 181

Query: 230 FPFAQRP--DNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAI--N 397
               +R    +Y    V++YE   +   +++++ +S ++    SY +  +   E++   +
Sbjct: 182 KRSYERSYERSYKRSYVRSYER-SYKRSYKRSYKRSYKRSYKRSYKRSYERSYERSYKRS 240

Query: 398 FVGNYWQENADLYEEEVTKDYQRSYE 475
           +  +Y +     YE    + Y+RSYE
Sbjct: 241 YKRSYERSYERSYERSYERSYERSYE 266


>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +3

Query: 3   SIHITTTSTRTCLSGGVLRDMVTLSIAVAKYI----TISTNN*QHVITSSVLQTAWVPYL 170
           +IHI++  T   L G +L+    L   V KY+     +  NN + V  +  L +   PY 
Sbjct: 372 TIHISSQKTSRTLGGVILQFSQDLHAMVQKYVKHFRPLLMNNGKEVEDAMFLTSRGTPYS 431

Query: 171 NS 176
           NS
Sbjct: 432 NS 433


>SB_42611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +3

Query: 3   SIHITTTSTRTCLSGGVLRDMVTLSIAVAKYI----TISTNN*QHVITSSVLQTAWVPYL 170
           +IHI+   T   L G +L+    L   V KY+     +  NN + V  +  L +   PY 
Sbjct: 399 TIHISNQKTSRTLGGVILQFSQDLHAMVQKYVKHFRPLLMNNGKEVEDAMFLTSRGTPYS 458

Query: 171 NS 176
           NS
Sbjct: 459 NS 460


>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 18  TTSTRTCLSGGVL-RDMVTLSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 182
           T++    L  G+L +  V   ++V+ YI  S +    V+T  + ++  +PYL  LG
Sbjct: 461 TSNPSVMLGAGLLAKKAVQAGLSVSPYIKTSLSPGSGVVTYYLQESGVLPYLEQLG 516


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 347 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 487
           FE Y    ++ DEKA  ++  Y ++ A  +  E     +RSY  + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,383
Number of Sequences: 59808
Number of extensions: 353742
Number of successful extensions: 1081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)