Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B18
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    31   0.053
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    31   0.092
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   0.86 
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.1  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   1.5  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    26   2.0  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   3.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   3.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   4.6  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    24   8.0  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 31.5 bits (68), Expect = 0.053
 Identities = 22/81 (27%), Positives = 27/81 (33%)
 Frame = -3

Query: 369 PGEQSNPGIPKSPFNPGLPGKPYPGAXXXXXXXXXXXXXXXXSIPINPGKPASPFWPFSD 190
           P   S  G+P S      P  P P A                    +P   + PF+PF  
Sbjct: 247 PPTSSRSGLPLSVMYNHFPSVPIPPATVNDTSMEYYLPNAYP----HPTGISLPFYPFDS 302

Query: 189 AKPGSPF*PIEPSKPLSPFSP 127
             P SP  P+ PS    P  P
Sbjct: 303 GIPVSPNIPVSPSSSFVPMYP 323


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.7 bits (66), Expect = 0.092
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 405 PGNPRSPF*PGDPGEQSNPGIPKSPFNPGLPG 310
           PG P +PF PG P   + PGIP +   PG PG
Sbjct: 533 PGMP-APF-PGYPAVPAMPGIPGATAPPGAPG 562



 Score = 30.3 bits (65), Expect = 0.12
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 296 PGYGLPGSPGLKGDF-GMPGLDCSPGSPGQKGDRGFPG 406
           PG  LP  PG+   F G P +   PG PG     G PG
Sbjct: 527 PGMALP--PGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562



 Score = 30.3 bits (65), Expect = 0.12
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +3

Query: 3   GYQGAPGTPGPQGSVGPIGAPGLKGDQGFVGPPGPPG 113
           GY   P  PG  G+  P GAPG            PPG
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPG 577



 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 405 PGNPRSPF*PGDPGEQSNPGIPKS 334
           PG P  P  PG PG  + PG P S
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGS 563



 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 12  GAPGTPGPQGSVGPIGAPGLKGDQGFVGP-PGPP 110
           GAPG P    S  P+  PG+    G   P PG P
Sbjct: 510 GAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYP 543



 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 351 PGIPKSPFNPGLPGKPYP 298
           PG P  P  PG+PG   P
Sbjct: 540 PGYPAVPAMPGIPGATAP 557


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 338 FGMPGLDCSPGSPGQKGDRGFPG 406
           +G  GL+  PG PG     GFPG
Sbjct: 71  YGEEGLNGQPGGPGGGPGEGFPG 93


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 222 KPASPFWPFSDAKPGSPF*PIEPSKPLSPFSPGNLLFLV--VQVAQQSLD 79
           +P+SP  P  +  P  P  P++ ++   P SP   +  V   Q AQ SL+
Sbjct: 403 QPSSPVQPVQNGVPAPPMQPVQSTQYYQPSSPVQPVQNVKPAQPAQPSLE 452


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 293  APGYGLPGSPGLKGDFGMPGLDCSPGSPG 379
            +PGY  P S  +   +G+     SP SPG
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPG 1564


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 234 WVWMVCRAKMVKKVIKEIQVPLD 302
           W+W VC + ++  +I  + VPL+
Sbjct: 112 WIWHVCLSILLPLIIMAMMVPLE 134


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 222 KPASPFWPFSDAKPGSPF*PIEPSKPLSPFSPGNLLFLVVQVAQQSLDLPLIL 64
           K  +PFWPF+          I+ +K      P   +F  V   +  LDL L++
Sbjct: 152 KLGTPFWPFTSFNEED----IKDAKDFDVTRPIEAVFTYVDPVRLGLDLQLVM 200


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 292 CPWIWFTWKSRVKRRLW 342
           C   +F W+ +V+R+LW
Sbjct: 590 CTAAYFVWQKKVERKLW 606


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 195 SDAKPGSPF*PIEPSKPLSPFSP 127
           S A P  P   + PS+P++PF P
Sbjct: 928 SIAAPPGPEYRLNPSRPINPFEP 950


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 159 LLVKKENRV*HLRKAKKEKLV--CQD*WV 239
           +L++ EN+V   R+ + EKLV  C + WV
Sbjct: 611 MLLRLENKVVDFREVQSEKLVLRCWNAWV 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,454
Number of Sequences: 5004
Number of extensions: 37412
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)