Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B18
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    26   0.14 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    26   0.14 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   4.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 93  GPPGPPGREGYLVKKETEV 149
           GPPG PG  G    K+TEV
Sbjct: 333 GPPGVPGDHGDHAPKQTEV 351



 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 311 PGSPGLKGDFG 343
           PG PG+ GD G
Sbjct: 332 PGPPGVPGDHG 342



 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 362 SPGSPGQKGDRG 397
           +PG PG  GD G
Sbjct: 331 NPGPPGVPGDHG 342



 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 12  GAPGTPGPQGSVGP 53
           G PG PG  G   P
Sbjct: 333 GPPGVPGDHGDHAP 346


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 93  GPPGPPGREGYLVKKETEV 149
           GPPG PG  G    K+TEV
Sbjct: 333 GPPGVPGDHGDHAPKQTEV 351



 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 311 PGSPGLKGDFG 343
           PG PG+ GD G
Sbjct: 332 PGPPGVPGDHG 342



 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 362 SPGSPGQKGDRG 397
           +PG PG  GD G
Sbjct: 331 NPGPPGVPGDHG 342



 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 12  GAPGTPGPQGSVGP 53
           G PG PG  G   P
Sbjct: 333 GPPGVPGDHGDHAP 346


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 156 PSKPLSPFSPGNLLFLVVQVAQQSLDLPLILVHL 55
           P  P  P  PG +   V+Q A  S+   L L+ L
Sbjct: 393 PCTPSPPRGPGGVPTSVIQAATSSVSDDLYLLEL 426


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 93  GPPGPPGREGYLVKKET 143
           GPPG PG  G    K+T
Sbjct: 272 GPPGVPGDHGDHAPKQT 288



 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 311 PGSPGLKGDFG 343
           PG PG+ GD G
Sbjct: 271 PGPPGVPGDHG 281



 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 362 SPGSPGQKGDRG 397
           +PG PG  GD G
Sbjct: 270 NPGPPGVPGDHG 281



 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 12  GAPGTPGPQGSVGP 53
           G PG PG  G   P
Sbjct: 272 GPPGVPGDHGDHAP 285


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 348 GIPKSPFNPGLPGK 307
           G PK    PGLPG+
Sbjct: 20  GTPKEEPGPGLPGQ 33



 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 338 FGMPGLDCSPGSPGQKGDRGF 400
           +G P  +  PG PGQ+  + F
Sbjct: 19  YGTPKEEPGPGLPGQEVKQSF 39


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 348 GIPKSPFNPGLPGK 307
           G PK    PGLPG+
Sbjct: 20  GTPKEEPGPGLPGQ 33



 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 338 FGMPGLDCSPGSPGQKGDRGF 400
           +G P  +  PG PGQ+  + F
Sbjct: 19  YGTPKEEPGPGLPGQEVKQSF 39


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 348 GIPKSPFNPGLPGK 307
           G PK    PGLPG+
Sbjct: 20  GTPKEEPGPGLPGQ 33



 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 338 FGMPGLDCSPGSPGQKGDRGF 400
           +G P  +  PG PGQ+  + F
Sbjct: 19  YGTPKEEPGPGLPGQEVKQSF 39


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 362 SPGSPGQKGDRGFP 403
           +PG PG KG R FP
Sbjct: 57  NPG-PGSKGPRDFP 69


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 299 GYGLPGSPGLKGDFGMPGLDCSPGS 373
           G  +P  P +    GMP L   PGS
Sbjct: 414 GAPMPPIPNMSNMSGMPPLPNMPGS 438


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 293  APGYGLPGSPGLKGDFGMPGLDCSPGSP 376
            +PG G+PG  G+K    M G+   P +P
Sbjct: 1134 SPG-GIPGPNGIKMPSFMEGMPHLPFTP 1160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,896
Number of Sequences: 438
Number of extensions: 3033
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)