Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B17
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846     29   2.6  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    27   8.0  
01_03_0204 + 13771346-13772680                                         27   8.0  

>11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846
          Length = 173

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +3

Query: 315 TLWRIPEEAAGRCPAQRSTEHPWRLLLTQGFYIAHHTNRIRCRTRQR 455
           TL  +   A+   P  R   HP RL    G  +AHH    R   R R
Sbjct: 48  TLTALANSASASIPTGRGRTHPLRLDGGSGHQLAHHAVDARALVRAR 94


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 81  NFDHDKHIFTGHGGKQR--TKREATEHTNH 164
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


>01_03_0204 + 13771346-13772680
          Length = 444

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 509 QCLISNFWACSKAHNYCVI 565
           Q L +  WAC+++HN C+I
Sbjct: 79  QELAARAWACAQSHNRCII 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,408
Number of Sequences: 37544
Number of extensions: 306607
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)