Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B15
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22080.1 68417.m03193 pectate lyase family protein similar to...    31   0.37 
At4g22090.1 68417.m03194 pectate lyase family protein similar to...    29   1.5  
At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase...    28   3.4  
At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protei...    27   7.9  
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu...    27   7.9  

>At4g22080.1 68417.m03193 pectate lyase family protein similar to
           pectate lyase 2 GP:6606534 from [Musa acuminata]
          Length = 394

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 115 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMID--YASCGVVATN 288
           G +   P  + H++G    + + +  FG+    I HCY  +C   +ID  +AS G+  +N
Sbjct: 176 GMVRSSPTHVGHRKG---SDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISN 232

Query: 289 D 291
           +
Sbjct: 233 N 233


>At4g22090.1 68417.m03194 pectate lyase family protein similar to
           pectate lyase 2 GP:6606534 from [Musa acuminata]
          Length = 394

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 115 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMID--YASCGVVATN 288
           G +   P  + H++G    + + +  FG+    I HCY  +C   +ID  +AS  +  +N
Sbjct: 176 GKVRSSPTHVGHRKG---SDGDAITIFGSSNVWIDHCYLASCTDGLIDVIHASTAITISN 232

Query: 289 D 291
           +
Sbjct: 233 N 233


>At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 510

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +1

Query: 55  VSKILIIS-MIVCTVNAAVWIGALPKKPKELAHKEGCYIKEINDVVPFG----TELKPI 216
           +SK+L  S M+V ++N  +         K  AHKEGC +K  N ++ F     +E KPI
Sbjct: 433 ISKLLHESLMLVTSLNPKIGYDNAAAVAKR-AHKEGCTLKVNNKLLTFSSLNKSEFKPI 490


>At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protein
           (LTI65) / desiccation-responsive protein 29B (RD29B)
           nearly identical to SP|Q04980 Low-temperature-induced 65
           kDa protein (Desiccation-responsive protein 29B)
           {Arabidopsis thaliana}
          Length = 619

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 115 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPI 216
           G +  KPK L+H     +    ++VP GT++ P+
Sbjct: 89  GGVTGKPKSLSHAGETNVPASEEIVPPGTKVFPV 122


>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase PPIase
           (cyclophilin, cyclosporin A-binding protein) [Tomato]
           SWISS-PROT:P21568
          Length = 232

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 276 NTTRSVINHASSTGNSVAMSD--GL-EFCSKRYHIIDFFYVAAFLMCQFLWFL 127
           N  + VI   +     V ++D  GL +  S+RY++I+       LMC + WF+
Sbjct: 180 NIEKEVIIKTAKDNKPVVIADCGGLSDDRSERYYLINIVVACMVLMCFWSWFV 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,684,700
Number of Sequences: 28952
Number of extensions: 244138
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)