Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B13
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 32 0.056
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 28 0.91
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 3.7
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 3.7
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 4.8
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 4.8
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 25 6.4
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 25 6.4
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 25 6.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 6.4
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 25 6.4
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 25 8.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 8.5
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 32.3 bits (70), Expect = 0.056
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +1
Query: 250 FKDDPEFIVQIDGATDETETSKSALERTVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPL 429
++D +FI +I ++T S S LE AI L KN+V+ +M + L + +
Sbjct: 223 YQDALKFIYEIGDDLEDTFRSFSFLELH-SLAIKLSKLVTCKNEVVPIMVSHSPALFVGI 281
Query: 430 YAALYLGVIIAPVD 471
A LY G P+D
Sbjct: 282 LAILYSGNAYCPID 295
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +1
Query: 325 ERTVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVIIAPVDRTLGL 486
E +++ + L + G++KNDV+ + +D + L +G P++ L
Sbjct: 1788 EYSIKASYWLHSIGIKKNDVVAVFIDKSLDYYSLMLGVLRIGAFFFPLEHCSSL 1841
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 28.3 bits (60), Expect = 0.91
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 382 VIVLMAPNHIDLEIPLYAALYLGVIIAPV 468
V+VLM + D LYA YLG+I PV
Sbjct: 945 VVVLMYTHSEDFVYALYACFYLGLIPIPV 973
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 431 MQHCISE*LLLLWTEHLVSRNYK 499
M++C+S LL WT+HL R +K
Sbjct: 1 MRNCVSP-LLFAWTKHLRLREFK 22
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 109 QKIDKMTQQRRDNDSVHWYINELTSRIIAESQIPTDRFHLGKMI 240
+K+ + QQR DND Y+ ++ S I+ + + RF K +
Sbjct: 300 KKVVRRLQQRDDNDEK--YVYKVLSEILRDDMLKKQRFDENKYL 341
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 461 LLWTEHLV-SRNYKERSVLLGQKLYSAKLRELQRLNWLSII*KW 589
+L +H+ SR K+ LL Y+ L E + +WL ++ KW
Sbjct: 400 ILTLDHVYGSREGKDLPNLLKMLEYNRLLEEWEEKDWLKLLKKW 443
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 412 DLEIPLYAALYLGVIIAPVDRTLGLQELQGTFSVIGPKIIF 534
D+E +AAL +G + + +LGL E F++ K +F
Sbjct: 31 DIEFLSFAALKIGATSSLSNSSLGLPEYSNLFAINNLKSLF 71
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 313 KSALERTVRCAIALRNFGLQKNDVIVLMAPNHID 414
K+ ER + IAL F K +V V+ AP H D
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRD 97
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 313 KSALERTVRCAIALRNFGLQKNDVIVLMAPNHID 414
K+ ER + IAL F K +V V+ AP H D
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRD 97
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 6.4
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Frame = +1
Query: 124 MTQQRRDNDSVHWYINELTS--RIIAE-------SQIPTDRFHLGKMIFQSFKDDPEFIV 276
M + +RD D W NEL S + AE +++ T + F F + V
Sbjct: 222 MYKLKRDKDEKTWSSNELFSIDDLRAELSCSYVINEVSTSDKQFCALAFGDFSNHETKFV 281
Query: 277 QIDGATDETETSKSALERTVRCAIALRNFGLQKNDV 384
+D +T E + + LER +F + KNDV
Sbjct: 282 LVDTSTGELKKEPTKLERASEEICRAISFDV-KNDV 316
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 115 IDKMTQQRRDNDSVHWYINELTSRIIAESQIPTDRF 222
IDK+ R D I EL + + E ++P D F
Sbjct: 30 IDKLVASNRTRDERVESIQELFQKCVIEEKLPVDIF 65
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 313 KSALERTVRCAIALRNFGLQKNDVIVLMAPNHID 414
K+ ER + IAL F K +V V+ AP H D
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRD 97
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 295 DETETSKSALERTVRCAIALRNFGLQKNDVIVLMAPNHI 411
++ E +L V+ LR GLQKN ++ MAP I
Sbjct: 14 NDFEYPTESLREAVKEFDELRQKGLQKNGEVLAMAPAFI 52
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 121 KMTQQRRDNDSVHWYINELTSRI 189
++ QQ RDN+ + +INEL +I
Sbjct: 745 EIVQQVRDNEEIEVHINELDVKI 767
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 364 GLQKNDVIVLMAPNHIDLEIPLYAALYLGVIIAPVD 471
G+++ DV+++ A +DL + + L G + +D
Sbjct: 333 GIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVID 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,611
Number of Sequences: 5004
Number of extensions: 49463
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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