Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B13
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0403 - 28696043-28696153,28696245-28696347,28696443-286965... 40 0.002
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667... 38 0.005
08_01_0214 - 1710317-1710443,1710839-1711047,1711161-1711420,171... 38 0.006
09_06_0236 - 21781508-21783043,21783307-21783504 36 0.025
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428... 33 0.17
07_03_0407 - 17791696-17791831,17792531-17792646,17794029-177942... 32 0.31
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 31 0.70
06_03_0983 - 26559772-26559915,26560149-26560251,26560335-265605... 31 0.93
10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220... 29 2.8
04_03_0305 - 14125193-14125421,14125666-14127104 29 3.8
03_01_0213 + 1685862-1686059,1686194-1687732 28 6.6
10_01_0063 - 827069-827089,827444-829384,830582-830593 27 8.7
>02_05_0403 -
28696043-28696153,28696245-28696347,28696443-28696510,
28696582-28696727,28698038-28699124
Length = 504
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/94 (25%), Positives = 40/94 (42%)
Frame = +1
Query: 262 PEFIVQIDGATDETETSKSALERTVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAAL 441
P+ I AT T T R A AL G+ D ++++ N ++ + +AA
Sbjct: 55 PDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGDRVMVLLQNCVEFAVAFFAAS 114
Query: 442 YLGVIIAPVDRTLGLQELQGTFSVIGPKIIFCQT 543
+LG + + QE+ F G K+I Q+
Sbjct: 115 FLGAVTTAANPFCTPQEIHKQFKASGVKLILTQS 148
>08_02_0851 -
21866088-21866210,21866311-21866413,21866531-21866744,
21866877-21867075,21867171-21868151
Length = 539
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +1
Query: 166 INELTSRIIAESQIPT----DRFHLGKMIFQSFKDDPEFIVQIDGATDETETSKSALERT 333
+ L + + S++P D L +F+ D + IDGAT ET + +
Sbjct: 1 MGSLPEQFVFRSRLPDIAIPDHLPLHDYVFERLADRRDRACLIDGATGETLSFGDVDALS 60
Query: 334 VRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVI 456
R A L + G+ ++L+ PN ++ + A+ LG +
Sbjct: 61 RRVAAGLSSIGVCHGSTVMLLLPNSVEFAVAFLASSRLGAV 101
>08_01_0214 -
1710317-1710443,1710839-1711047,1711161-1711420,
1711442-1711534,1711745-1711872,1711958-1712151,
1712288-1712385,1712548-1712658,1712782-1712950,
1713109-1713181,1713311-1713507
Length = 552
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 337 RCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVIIAPVDRTLGLQELQGTFSVI 516
R A AL N G+++ V+ ++A N I+ A Y+G IIAP++ +E ++
Sbjct: 43 RLAAALSNLGVRRGHVVAVVAFNSIEYIELFLAVTYIGGIIAPLNYRWSFEEASQALELV 102
Query: 517 GPKI 528
P +
Sbjct: 103 QPTV 106
>09_06_0236 - 21781508-21783043,21783307-21783504
Length = 577
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +1
Query: 307 TSKSALERTVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVIIAPVDRTLGL 486
T + R +R A AL++ + KNDV+ ++APN L +A G ++ ++ L
Sbjct: 41 TWRQTHHRCLRLAAALQSLAVSKNDVVSVIAPNTPALYEMHFAVPMAGAVLNAINTRLDA 100
Query: 487 QELQGTFSVIGPKIIF 534
+ PK++F
Sbjct: 101 ANVAAIVRHAEPKVLF 116
>02_01_0577 +
4280590-4281225,4281749-4282102,4282214-4282412,
4284991-4285204,4285299-4285401,4285481-4285639
Length = 554
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Frame = +1
Query: 280 IDGATDETETSKSALERTVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVII 459
IDG T E+ T + R A LR G+ K DV++ + N + A LG
Sbjct: 45 IDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGAAT 104
Query: 460 APVDRTLGLQELQGTFSVIGPKIIF---CQTERATE 558
+ E+ G ++I C E+ E
Sbjct: 105 TTANPFYTPHEVHRQAEAAGARVIVTEACAVEKVRE 140
>07_03_0407 -
17791696-17791831,17792531-17792646,17794029-17794233,
17794691-17795034
Length = 266
Score = 32.3 bits (70), Expect = 0.31
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Frame = +1
Query: 310 SKSALERTVRC---AIALRNFGLQKNDVIV--LMAPNHIDLEIPLYAALYLGVIIAPVDR 474
+++ + TV C A+ + + L+K +V L +P + +++AL+LG ++ PV
Sbjct: 165 TRAKIAGTVLCLAGAVTMSTWALEKKGPVVVSLFSPTQT-VGSAIFSALFLGRVVHPVS- 222
Query: 475 TLGLQEL-QGTFSVIGPKIIFCQTERATETQLALNNLE 585
LG+ L G + V+ K CQ +R E A N++E
Sbjct: 223 MLGMVFLFSGLYVVLWAKKKECQVDRMVEDGTA-NDIE 259
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 402 ESYRFRNTVICSIVSRS-DYCSCGQNTWSPGITRNV 506
+S RFRN ++ I+SR + CS G +SPG+T V
Sbjct: 464 DSCRFRNLLVSGIISRDLNVCSYGAG-YSPGVTGTV 498
>06_03_0983 -
26559772-26559915,26560149-26560251,26560335-26560548,
26563352-26563550,26564509-26564862,26565430-26566086
Length = 556
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/84 (25%), Positives = 32/84 (38%)
Frame = +1
Query: 280 IDGATDETETSKSALERTVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVII 459
IDG T + E + R A LR G+ K DV++ + N + A LG
Sbjct: 49 IDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEFAFTFLGAARLGAAT 108
Query: 460 APVDRTLGLQELQGTFSVIGPKII 531
+ E+ S G ++I
Sbjct: 109 TTANPFYTPHEIHRQASAAGARVI 132
>10_06_0169 +
11420115-11420163,11420922-11421041,11421938-11422053,
11422125-11422213,11422413-11422455,11423296-11423440,
11423581-11423688,11423767-11424086,11424255-11424671,
11424776-11425470,11425564-11426107,11426338-11426682,
11426799-11426909
Length = 1033
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 97 YCNRQKIDKMTQQRRDNDSVHWYINELTSRIIAESQIPTDRFHLGKMIFQ 246
+ +++ +D Q + + +W E S I A S+ P D+F + M+ Q
Sbjct: 399 WMSKELLDVEDSQIQSSSGAYWNTEEADSIIEASSREPLDQFTVAPMVLQ 448
>04_03_0305 - 14125193-14125421,14125666-14127104
Length = 555
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 331 TVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVIIA 462
T R A ALR+ G++K V+V+ PN + +Y + LG++ A
Sbjct: 71 TARFARALRSVGVRKGHVVVVALPN-----LAVYPVVSLGIMSA 109
>03_01_0213 + 1685862-1686059,1686194-1687732
Length = 578
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +1
Query: 328 RTVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVIIAPVDRTLGLQELQGTF 507
R R A +L + G++ +DV+ ++APN + +A G ++ ++ L + + G
Sbjct: 48 RCRRLASSLLSLGVRNHDVVSVLAPNVPAMYEMHFAVPMAGAVLNTINTRLDARAVAGIL 107
Query: 508 SVIGPKIIF 534
K+ F
Sbjct: 108 RHSEAKVFF 116
>10_01_0063 - 827069-827089,827444-829384,830582-830593
Length = 657
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 245 KVSKMILNSLCRLMEQQMKRKQVNQHLK 328
++ K++L +C ++Q+ KQV QHL+
Sbjct: 607 EIGKLLLKCICLEIDQRPTMKQVAQHLR 634
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,988
Number of Sequences: 37544
Number of extensions: 270819
Number of successful extensions: 631
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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