Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B13
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            45   4e-05
SB_48304| Best HMM Match : AMP-binding (HMM E-Value=0)                 40   0.002
SB_1655| Best HMM Match : Wzy_C (HMM E-Value=3.9)                      40   0.002
SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_53508| Best HMM Match : Shugoshin_N (HMM E-Value=6.4)               27   8.8  

>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
 Frame = +1

Query: 151 SVHWYINELTSRIIAES----QIPTDRFHLGKMIFQSFKDDPEFIVQIDGATDETETSKS 318
           ++ WY      RI+  S     +P ++ ++ + I    K + +    +DG T ET T   
Sbjct: 419 TIRWYTVSSDDRILRSSYPAIDVPKNQSYV-QFILDCCKRNGDKEALVDGPTGETYTYTD 477

Query: 319 ALERTVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVIIAPVDRTLGLQEL 495
            +    +C  AL   G++  DV +L  PN +   + LY A  +G ++   +    + EL
Sbjct: 478 LITLIKKCGSALLQAGVKPKDVALLHLPNIMQYPVYLYGAQAIGAVVTTANPGYTVDEL 536


>SB_48304| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 374

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 280 IDGATDETETSKSALERTVRCAIALRNFGLQKNDVIVLMAPNHIDLEIPLYAALYLGVII 459
           +DG T ET T    +  T +C  A+   G+   DV++L  P+ +   + LY A  +G ++
Sbjct: 1   VDGPTGETFTYTDLITLTKKCGSAMLRAGVTPKDVVLLHLPSIMQYAVYLYGAQAMGGVV 60

Query: 460 APVDRTLGLQEL 495
           +  +      EL
Sbjct: 61  STANPGYSADEL 72


>SB_1655| Best HMM Match : Wzy_C (HMM E-Value=3.9)
          Length = 194

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/122 (19%), Positives = 48/122 (39%)
 Frame = +1

Query: 205 IPTDRFHLGKMIFQSFKDDPEFIVQIDGATDETETSKSALERTVRCAIALRNFGLQKNDV 384
           +P+D     + + +  +   E    +D  +  + T     E   +C  AL   GLQ  D+
Sbjct: 13  VPSDIHSFPRYVLKHMESYGEETAMVDSTSGRSYTYNKLTEMIKKCGSALIRQGLQTKDM 72

Query: 385 IVLMAPNHIDLEIPLYAALYLGVIIAPVDRTLGLQELQGTFSVIGPKIIFCQTERATETQ 564
           + ++ PN  +  I  Y    +G I+  ++      E+       G K +    + A + +
Sbjct: 73  VAVLLPNMPEYPIVFYGVTSVGGIVTTINPAYTTDEIIYQLKDSGAKYLVTVPQLAQKAK 132

Query: 565 LA 570
            A
Sbjct: 133 QA 134


>SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 475 TLGLQELQGTFSVIGPKIIFCQTERATETQLALNNLE 585
           TLGLQ L+  +  +   +I  Q++R  ET + L NL+
Sbjct: 67  TLGLQSLREKYPDLNENLIRFQSDRRGETLILLRNLD 103


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 128  HNRDVIMIPFTGTLMNLHPVLSLSHKYPLIDFISEK*SSKVSKMILNSLCR 280
            HN+ VI  PF     +LH  LS    YP +   +EK SS  +K  +   C+
Sbjct: 932  HNQHVISSPF-----DLHATLSHVLNYPDVSTANEKTSSFFTKFPVTRACK 977


>SB_53508| Best HMM Match : Shugoshin_N (HMM E-Value=6.4)
          Length = 221

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 475 TLGLQELQGTFSVIGPKIIFCQTERATETQLALNNLE 585
           TLGLQ L+  +  +   +I  Q++R  +T + L NL+
Sbjct: 68  TLGLQSLREKYPNLNENLIRFQSDRRGKTLIQLRNLD 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,239,924
Number of Sequences: 59808
Number of extensions: 340091
Number of successful extensions: 971
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)