Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B12
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 1.1
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 27 2.0
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1... 26 3.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.6
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr... 25 4.6
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 6.1
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.1
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 6.1
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 25 6.1
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 6.1
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 25 8.1
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 25 8.1
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 386 VSLKFVHTLRLESVSYGHSLMQLQIAS 306
VS +F H LRL+ V+ H + +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 214 VTHSGSRRHELSQP-PGIVSRPGSPPCRSRGAPTRRCP 104
++ S S H SQ PG S P P + G ++CP
Sbjct: 66 ISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKKCP 103
>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 165
Score = 25.8 bits (54), Expect = 3.5
Identities = 18/70 (25%), Positives = 27/70 (38%)
Frame = +1
Query: 106 DISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMKVHCSAGRV 285
+I E E L+ F EAERA + I + + AP+ ++ L P G V
Sbjct: 3 NIRNIERSEVEEVSKLEAICFPEAERASFARIKDRVKRAPEIQLGLFAPTQHTSTLIGHV 62
Query: 286 CEINEHGEAI 315
E +
Sbjct: 63 LTSRTGSETV 72
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 4.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = +1
Query: 268 CSAGRVCEINEHGEAICNCIKEC 336
C+A R+C++ E C+ +C
Sbjct: 974 CTASRICKVREIASLSLTCLLDC 996
>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 238 NLDDPCMKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 384
NL K++ G + + HG I CIK+ + + K T FNE
Sbjct: 105 NLHKGAAKIYSMGGVIAAVC-HGPVILPCIKDSTGFSIVKGKTVTAFNE 152
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 12 GRRRGPKTSSTPSALTYDDYGAADVGGASPRGH 110
GR+R K++ AL GA D + +GH
Sbjct: 79 GRKRSAKSAGNTLALQVTSSGAVDYNAIARQGH 111
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 251 GSSRLISLSGASRDSFRISETRALSAS 171
G+ +L +SRD+FR ++T+A S+S
Sbjct: 47 GNKKLKESQFSSRDNFRTTQTQASSSS 73
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 269 AAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPG 391
++P+ + STST S+ S + T+PT G Q + G
Sbjct: 464 SSPSGTNSSTSTSSTSSKHSTGISTEPTTGEENKQDGSVGG 504
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 6.1
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +1
Query: 85 SAGLPRGDISESEHLEN-GMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMK 261
S G IS E +N G+ E D E++ + E + P LDD +
Sbjct: 12 SNGFSEEYISHPERNDNQGIVEITDLVFSSESKLTQRKESRDSKTFVPSFLEELDDDHLH 71
Query: 262 VHCSAGRVCEINEHGEAICNCIKEC 336
+ G + +N GE + +++C
Sbjct: 72 ELVTNGGILYMNSLGEGVSGSVRKC 96
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 469 GGTAPRGTAPSGRGRGSAVGTPRSPMTRS 383
GGT G PS GSA+ P++ R+
Sbjct: 409 GGTGYTGVTPSHAANGSALAAPQATPFRT 437
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 387 GLVEVCAHLAPRVGFVWTLLDAVADS 310
G+V A +AP V +W +L+ + DS
Sbjct: 104 GMVLQWASIAPAVDAIWHILNVIDDS 129
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 8.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 142 AESLDERRFQEAERARVSEILNESRDAPDNEIN 240
A+ LDER F+ E S+ L ++DA N IN
Sbjct: 450 AQFLDEREFETDEEEEESQYLLSTKDA-INAIN 481
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,542
Number of Sequences: 5004
Number of extensions: 36264
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -