Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B11
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch... 68 1e-12
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 60 3e-10
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 56 4e-09
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 51 2e-07
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 27 2.4
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 3.1
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 26 4.2
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 5.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 5.5
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 7.3
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.6
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 25 9.6
>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 129
Score = 68.1 bits (159), Expect = 1e-12
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = +3
Query: 489 DRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
++TIT+ EV H+T DD ++V+ D+V+DIS FLD HPGG +++++ AG DAS F
Sbjct: 3 EKTITVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPF 57
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 60.1 bits (139), Expect = 3e-10
Identities = 24/49 (48%), Positives = 36/49 (73%)
Frame = +3
Query: 510 EVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAFR 656
E+ H+ D ++VI +V+D+S F D+HPGG DIML+YAG DA+ A++
Sbjct: 10 EIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQ 58
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 56.0 bits (129), Expect = 4e-09
Identities = 25/65 (38%), Positives = 39/65 (60%)
Frame = +3
Query: 459 QIIPGAEDAKDRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTD 638
Q + G E K +T E++ H T +DCW+ I +V+++S +L HP G +L+YAG D
Sbjct: 63 QNLSGVE--KPIPVTKEELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRD 120
Query: 639 ASTAF 653
A+ F
Sbjct: 121 ATVIF 125
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 50.8 bits (116), Expect = 2e-07
Identities = 18/53 (33%), Positives = 36/53 (67%)
Frame = +3
Query: 495 TITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
++T E++ H +PDDCW+ I +V++++ +L HP G +L+++G DA+ +
Sbjct: 71 SVTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPY 123
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 569 KDSIVNNDPAIVRGVMQADFYKSY 498
+DSI+ N +I RG+ ++ FY++Y
Sbjct: 825 EDSIIMNQASIDRGLFRSIFYRTY 848
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 454 RTK*YPGRRMLRIVQ*LL*KSACMTPLTIAGSLFTIESLISPHSSMNIL 600
RT+ P R RI+Q + + C+ L+ SL SLI + NIL
Sbjct: 824 RTQRLPSRENCRILQSMAIQMGCVLDLSSTKSLLRSLSLIEDDTVRNIL 872
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 339 STAIPVNQDNSELDLMALTMAALRFVNPWTVESEKNKWT 455
STAIP ++D+S D + + +NP S +N ++
Sbjct: 118 STAIPFSKDSSVFDAVGQQSSVPIHINPAYTNSHQNSYS 156
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 553 ITTQQSSGVSCKLTSTRVIVRSLASSAPGIIWSVHLFFSD 434
+TT S S K+ V+ ++ PG+IW+V F +D
Sbjct: 687 VTTLPSIKFSNKVVKDNVVNVTVTVEHPGLIWTVVSFDAD 726
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 228 RNRSVIRVN*DLRSC*RLVKRKKIKMATVQTVPEIKLSTAIPVNQDNSELDLMALTMAAL 407
R R IR++ ++S L + KKIK T+++ S + SE++ T+ +L
Sbjct: 595 RERLEIRISLSVQSINDLTENKKIKTKTLKSYSGTFASMISEIKALESEIEENRKTLHSL 654
Query: 408 RF 413
+F
Sbjct: 655 QF 656
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 572 IKDSIVNNDPAIVRGVMQADFYK 504
+K++ N D AI+R V+ A YK
Sbjct: 25 LKEAFPNTDDAIIRAVLAASGYK 47
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 411 FVNPWTVESEKNKWTDQIIPGAEDAKDRTI 500
F N TV E KW+ I+PG + TI
Sbjct: 287 FRNSITVLFEDGKWSPPIVPGLHSRVEFTI 316
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 640 ASVPAYSNIISAPPGCSSRNVEISKTRS 557
+S+P YSN I +P SS +SK ++
Sbjct: 31 SSMPVYSNSIGSPSAHSSSYKGVSKAKT 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,984
Number of Sequences: 5004
Number of extensions: 46597
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -