Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_B11
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592 65 5e-11
05_01_0065 + 461182-461271,462222-462288,462408-462664 64 1e-10
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478 59 4e-09
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 58 6e-09
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 58 8e-09
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 58 8e-09
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 54 8e-08
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738... 54 1e-07
09_02_0530 + 10285844-10287217 47 2e-05
03_04_0223 + 18892459-18892765,18892976-18893652 30 1.4
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 30 1.9
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 29 3.3
04_01_0503 + 6594896-6595804 29 3.3
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 28 5.7
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 28 5.7
>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
Length = 135
Score = 64.9 bits (151), Expect = 5e-11
Identities = 24/57 (42%), Positives = 41/57 (71%)
Frame = +3
Query: 483 AKDRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
+ ++ +TL EVS H+T DDCW++I +V++++ FL++HPGG D++L DA+ F
Sbjct: 2 SNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDF 58
>05_01_0065 + 461182-461271,462222-462288,462408-462664
Length = 137
Score = 63.7 bits (148), Expect = 1e-10
Identities = 24/54 (44%), Positives = 39/54 (72%)
Frame = +3
Query: 492 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
+ TL EV+ H++ DDCW++I +V+++S FL++HPGG D++L G DA+ F
Sbjct: 7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDF 60
>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
Length = 138
Score = 58.8 bits (136), Expect = 4e-09
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3
Query: 510 EVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
EVS H+ DCW++I +V+D+S F++EHPGG +++L G DA+ F
Sbjct: 12 EVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADF 59
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 58.0 bits (134), Expect = 6e-09
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +3
Query: 501 TLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
T+ EV H TP+ W++++ V+D + FL +HPGGAD ++ AGTD + F
Sbjct: 517 TMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEF 567
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 57.6 bits (133), Expect = 8e-09
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +3
Query: 492 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
+ T+ EV H + D W+V++ V+D + FL +HPGGAD +L AGTD + F
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF 595
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 57.6 bits (133), Expect = 8e-09
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +3
Query: 492 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
+ T+ EV H + D W+V++ V+D + FL +HPGGAD +L AGTD + F
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEF 595
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 54.4 bits (125), Expect = 8e-08
Identities = 22/45 (48%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +3
Query: 522 HDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLE-YAGTDASTAF 653
H + DCWVVI+ +V+D++ FL++HPGG D++L A DA+ AF
Sbjct: 21 HASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAF 65
>07_01_0887 +
7380332-7380370,7381286-7381640,7382752-7382886,
7383029-7383138
Length = 212
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = +3
Query: 492 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
R I+L EV H T D W V+ RV++I+ ++ HPGG D++++ AG D++ F
Sbjct: 140 RLISLEEVKQHKTGDSIWTVLKGRVYNIAPYMKFHPGGVDMLMKAAGKDSTALF 193
>09_02_0530 + 10285844-10287217
Length = 457
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +3
Query: 492 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
R I+ E+ H + DD W+ I V+D++ ++ HPGG +L AG DA+ AF
Sbjct: 17 RMISSEELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAF 70
>03_04_0223 + 18892459-18892765,18892976-18893652
Length = 327
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 420 PWTVESEKNKW---TDQIIPGAEDAKDRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLD 590
P+++ +W T + G E A IT +H TP + ++ DR+ +I++F++
Sbjct: 83 PFSLHERAKQWYTSTVGCVNGRESAFHLDITAGGTFMHKTPSEGKEIL-DRILEITSFIE 141
Query: 591 EH 596
+H
Sbjct: 142 QH 143
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 503 SYCTILSILRPGYYLVRPFVFLRFNRPWVHKS 408
++CT+L L + V PF FLR + W H S
Sbjct: 188 NFCTLLDTLAELHSAVVPFFFLRKDYQWFHDS 219
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 29.1 bits (62), Expect = 3.3
Identities = 8/18 (44%), Positives = 17/18 (94%)
Frame = +3
Query: 564 VFDISTFLDEHPGGADIM 617
V+D++++++EHPGG +I+
Sbjct: 41 VYDVTSYVEEHPGGDEIL 58
>04_01_0503 + 6594896-6595804
Length = 302
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 528 TPDDCWVVIYDRVFDISTFLDEHPGGA----DIMLEYAGTDASTAF 653
TPDDC + V DI+ + + A L YA T+ASTA+
Sbjct: 105 TPDDCATYLRSAVLDINGHCNSNRRAAIWYDKCFLSYADTNASTAY 150
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 547 TQQSSGVSCKLTSTRVIVRSLASSAPGIIWSVHLFFSDSTVH 422
+ SS + C+L T IV+ + + + W VH + ++ H
Sbjct: 510 SSSSSYMGCRLLPTGCIVQDMNNGYSKVTWVVHAEYDETAAH 551
>07_03_1503 +
27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 378 DLMALTMAALRFVNPWTVESEKNKWTDQIIPGAEDAKDRTITLVE-VSLHDTPDDC 542
D+ AL + LRF+NP +VE E QI + + T+T ++ V + +DC
Sbjct: 773 DVKALVSSMLRFINPHSVEEEH----CQIKTNPQGSSASTVTQIDTVDVKHDCEDC 824
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,728,373
Number of Sequences: 37544
Number of extensions: 291658
Number of successful extensions: 716
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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