Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B11
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                 69   4e-12
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                69   4e-12
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)                51   7e-07
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)                47   1e-05
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   43   3e-04
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)                42   6e-04
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              35   0.051
SB_3528| Best HMM Match : DUF1316 (HMM E-Value=6.9)                    30   1.9  
SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)        28   5.8  
SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 109

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 28/60 (46%), Positives = 42/60 (70%)
 Frame = +3

Query: 474 AEDAKDRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
           A++   +  T  EV  H+    CW+VI+++VFD++ FLDEHPGG +++LE AG DAS +F
Sbjct: 2   ADNEDKKLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESF 61


>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 172

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 28/60 (46%), Positives = 42/60 (70%)
 Frame = +3

Query: 474 AEDAKDRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
           A++   +  T  EV  H+    CW+VI+++VFD++ FLDEHPGG +++LE AG DAS +F
Sbjct: 2   ADNEDKKLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESF 61


>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
          Length = 142

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +3

Query: 492 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAFR 656
           +  TL EV  H +  DCWVV+ D V+D+S ++  HPGG   +L  AG + +  F+
Sbjct: 11  KVYTLDEVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFK 65


>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
          Length = 167

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +3

Query: 510 EVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDAST 647
           E+  H +  D WV+   +V+DIS F + HPGG D++L  +G D ++
Sbjct: 14  EIGRHKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVTS 59


>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 33/54 (61%)
 Frame = +3

Query: 492 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
           +T T  ++S  +T  +  + I+ +V+D++ FL  HPGG +++L  AG D +  F
Sbjct: 23  KTFTWQQLSRLNTEQNAHLAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVF 76


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +3

Query: 468  PGAEDAKDRTITLV---EVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTD 638
            P     +  ++TL+   ++  H+     WVVI+ +V+D+  F +E P G  ++ +YA  D
Sbjct: 1218 PARRYGETGSLTLIRPEDLENHNKEGGMWVVIHGKVYDLKEFKEEAPCGESLLQKYAACD 1277

Query: 639  ASTAF 653
            A+ AF
Sbjct: 1278 ATKAF 1282


>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
          Length = 303

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 492 RTITLVEVSLH-DTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGT 635
           RT +L EV+ H D     W    D V+D++ F+++HPGG  +++  AG+
Sbjct: 156 RTFSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAGS 204


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 468 PGAEDAKDRTITLVEVSLHDTPDD-CWVVIYDRVFDISTFLDEHPGGADIMLEYAG 632
           PG +    +  +  EVS H+      WV     V+DI+ F+D HPGG   ++  AG
Sbjct: 194 PGQQLNTAKIYSKEEVSKHNNRKSRIWVTYKGGVYDITDFIDGHPGGTSKIILAAG 249


>SB_3528| Best HMM Match : DUF1316 (HMM E-Value=6.9)
          Length = 156

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 620 QHNICSTRMFIEECGDIKDSIVNNDPAIVRGVMQADFYKSYCTIL 486
           QHN+ S+R+ I      K  +  +D  +  GV Q+D    YC+++
Sbjct: 3   QHNVMSSRLVIR-----KKDLYKSDRQVKAGVQQSDMVLIYCSLI 42


>SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)
          Length = 687

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = -2

Query: 634 VPAYSNIISAPPGCSSRNVEISKTRS*ITTQQSSGVSCKLTSTRVIVRSLASSAPGIIWS 455
           V AY+      P     N+E+    S + T  +  +S +  ST  +++S+ + A G   +
Sbjct: 416 VTAYTRDTLDKPTSEHFNIELQAPGSEVLTMNNHLISAEFDSTTGMLKSITTKADGSRVN 475

Query: 454 VHLFFSDSTVHGFTNRKAA 398
           V L F       + +R  A
Sbjct: 476 VDLEFMTYGTKSYGDRSGA 494


>SB_10969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 569 KDSIVNNDPAIVRGVMQADFYKSY 498
           +DS++ N  AI RG+ ++ FY+SY
Sbjct: 677 EDSVIMNASAIDRGLYRSVFYRSY 700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,614,676
Number of Sequences: 59808
Number of extensions: 364213
Number of successful extensions: 786
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)