Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B11
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81052-7|CAJ58492.1|  103|Caenorhabditis elegans Hypothetical pr...    70   2e-12
Z78539-6|CAB01732.2|  134|Caenorhabditis elegans Hypothetical pr...    68   7e-12
AF003141-8|AAK21480.1|  141|Caenorhabditis elegans Hypothetical ...    60   1e-09
AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical ...    56   2e-08
AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical ...    56   2e-08
Z74038-3|CAA98498.2|   89|Caenorhabditis elegans Hypothetical pr...    47   1e-05
Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical pr...    34   0.10 
Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical pr...    34   0.10 
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...    29   2.2  
U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase ...    29   2.2  
Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF022985-5|AAB69974.1|  299|Caenorhabditis elegans Hypothetical ...    29   3.8  
U80024-4|AAK18888.1|  436|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z82093-1|CAB05018.1|  229|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81052-7|CAJ58492.1|  103|Caenorhabditis elegans Hypothetical
           protein D2023.1b protein.
          Length = 103

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 27/55 (49%), Positives = 42/55 (76%)
 Frame = +3

Query: 489 DRTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
           D  IT  EV++H + DDCW+++ + V+D++ F+D HPGG +I+LE+AG DA+ AF
Sbjct: 3   DSIITRSEVNMHCSEDDCWIIVGNYVYDVTKFVDLHPGGPEILLEFAGGDATDAF 57


>Z78539-6|CAB01732.2|  134|Caenorhabditis elegans Hypothetical
           protein C31E10.7 protein.
          Length = 134

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 27/54 (50%), Positives = 41/54 (75%)
 Frame = +3

Query: 492 RTITLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
           + ITL E++ H+T    W+VI ++VFD++ FLDEHPGG +++LE AG+D + AF
Sbjct: 5   KQITLKEIAEHNTNKSAWLVIGNKVFDVTKFLDEHPGGCEVLLEQAGSDGTEAF 58


>AF003141-8|AAK21480.1|  141|Caenorhabditis elegans Hypothetical
           protein W02D3.1 protein.
          Length = 141

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
 Frame = +3

Query: 492 RTITLVEVSLH---DTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
           R I+L EVS H   D    CW+VI  +V+D++ FL+EHPGG +++ + AG DA+  F
Sbjct: 5   RVISLDEVSKHNWEDADQSCWIVISGKVYDVTKFLNEHPGGEEVITQLAGKDATVGF 61


>AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3b protein.
          Length = 516

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 23/49 (46%), Positives = 33/49 (67%)
 Frame = +3

Query: 507 VEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
           VE+  H+T DDCWV ++  V+D++ +LD HPGG   +L  AG DA+  F
Sbjct: 24  VELMKHNTKDDCWVHLFGIVYDVTKYLDFHPGGIPELLRGAGRDATPLF 72


>AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3a protein.
          Length = 552

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 23/49 (46%), Positives = 33/49 (67%)
 Frame = +3

Query: 507 VEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDASTAF 653
           VE+  H+T DDCWV ++  V+D++ +LD HPGG   +L  AG DA+  F
Sbjct: 60  VELMKHNTKDDCWVHLFGIVYDVTKYLDFHPGGIPELLRGAGRDATPLF 108


>Z74038-3|CAA98498.2|   89|Caenorhabditis elegans Hypothetical
           protein F58B4.2 protein.
          Length = 89

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/49 (40%), Positives = 32/49 (65%)
 Frame = +3

Query: 501 TLVEVSLHDTPDDCWVVIYDRVFDISTFLDEHPGGADIMLEYAGTDAST 647
           T  +V  H T DD W++  D+V++++ + ++HPGG  I L YAG D +T
Sbjct: 13  TRSQVEQHCTHDDLWLLFRDKVYNMTPYFNQHPGGLAI-LRYAGKDVTT 60


>Z99942-5|CAI79198.1|  178|Caenorhabditis elegans Hypothetical
           protein H13N06.4b protein.
          Length = 178

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 510 EVSLHDTPDD-CWVVIYDRVFDISTFLDEHPGGADIML 620
           EV  H    D  WV   D V+D++ F+  HPGG  I+L
Sbjct: 86  EVKKHGKDADRIWVTYKDGVYDVTDFIAMHPGGDKILL 123


>Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical
           protein H13N06.4a protein.
          Length = 541

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 510 EVSLHDTPDD-CWVVIYDRVFDISTFLDEHPGGADIML 620
           EV  H    D  WV   D V+D++ F+  HPGG  I+L
Sbjct: 86  EVKKHGKDADRIWVTYKDGVYDVTDFIAMHPGGDKILL 123


>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
           (b) subunit protein2 protein.
          Length = 1193

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 569 KDSIVNNDPAIVRGVMQADFYKSY 498
           +DS++ N+ AI RG+ ++ FY+SY
Sbjct: 797 EDSVIMNNSAIDRGLFRSVFYRSY 820


>U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase II,
           second largestsubunit protein.
          Length = 859

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 569 KDSIVNNDPAIVRGVMQADFYKSY 498
           +DS++ N+ AI RG+ ++ FY+SY
Sbjct: 598 EDSVIMNNSAIDRGLFRSVFYRSY 621


>Z81038-3|CAB02759.1|  316|Caenorhabditis elegans Hypothetical
           protein C25A1.5 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 567 FDISTFLDEHPGGADIMLEYAGTDASTAFR 656
           +DI+ F  +HPGGA ++   AG +     R
Sbjct: 20  YDIADFAPKHPGGAKVLNRLAGEEIGEFIR 49


>AF022985-5|AAB69974.1|  299|Caenorhabditis elegans Hypothetical
           protein T15B7.8 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +3

Query: 318 TVPEIKLSTAIPVNQDNSELDLMALTMAALRFVNPWT 428
           ++ EIKL+++IPV++ N+E D + +T   +  V+  T
Sbjct: 59  SIEEIKLNSSIPVSEINAENDPIKITRTVIPTVSAKT 95


>U80024-4|AAK18888.1|  436|Caenorhabditis elegans Hypothetical
           protein C18B10.6 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/87 (25%), Positives = 42/87 (48%)
 Frame = +3

Query: 366 NSELDLMALTMAALRFVNPWTVESEKNKWTDQIIPGAEDAKDRTITLVEVSLHDTPDDCW 545
           +S+L  +A +   L++ +    E EK K+  +I+  A + +  T  L+E   H       
Sbjct: 96  SSQLPYIAFSKV-LKYTDENGYEDEKLKYLAKILRDAHNREIETYKLLEKFNHAN----- 149

Query: 546 VVIYDRVFDISTFLDEHPGGADIMLEY 626
            + Y +++ +  F DE+     I+LEY
Sbjct: 150 -IPYTKIYGLKPFYDENDLKGYIILEY 175


>Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 291 KKIKMATVQTVPEIKLSTAIPVNQDNSELDLMALTMAAL 407
           +K+K   +   PE K +   P++ D+ EL++++   A L
Sbjct: 122 RKLKPGEIDPTPETKPARPDPIDMDDDELEMLSEARARL 160


>Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 291 KKIKMATVQTVPEIKLSTAIPVNQDNSELDLMALTMAAL 407
           +K+K   +   PE K +   P++ D+ EL++++   A L
Sbjct: 122 RKLKPGEIDPTPETKPARPDPIDMDDDELEMLSEARARL 160


>Z82093-1|CAB05018.1|  229|Caenorhabditis elegans Hypothetical
           protein ZK39.2 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 622 SNIISAPPGCSSRNVEISKTRS*ITTQQSSGVSCKLTSTRVIVRSLASSAPGIIWS 455
           SN+  +  G SS  + +   R+    +Q    SC  TS+     S AS   G +W+
Sbjct: 110 SNLALSVIGRSSGGIWLGARRTTACAKQHKTTSCSTTSSFRWTDSSASGTAGFVWN 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748,070
Number of Sequences: 27780
Number of extensions: 267764
Number of successful extensions: 775
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)