Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_B10
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    27   1.9  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   2.5  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    25   7.7  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   7.7  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   7.7  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 245 PPATVTLQPSGTTLWTNAYHLKNAQR 322
           PP  VTL P    L  NA+ L+  Q+
Sbjct: 81  PPEQVTLSPESAKLLRNAHELQKTQK 106


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 66  RFFYNWERISSRVHLYKWTLSQGVSCWDA*LQHGLQPEN 182
           R FYN E+    V   + T S G + +D+ +QH +Q  N
Sbjct: 278 RVFYNLEKQREPVSTTELTRSFGWNSFDSFMQHDIQEFN 316


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 90  ISSRVHLYKWTLSQGVSCWDA*LQHGLQPENAGTHL 197
           I     L  + LSQG + W+A   +G+ P  A   L
Sbjct: 28  IKQAFELMNYALSQGSNYWNAGEFYGINPPTANLDL 63


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = -3

Query: 264 RVTVAGGVIAEDAFFFHGVGFLASGFRHFLAATRVVTMRPNRTLPVTTSIYIDAPARIFS 85
           RV + GGV +    ++  +G + S  R    A R + + P+  +PV     +   A + S
Sbjct: 186 RVILRGGVASGSGQYYFSIGSIDSFDRKLEDAQRQLGIPPSEFVPVAYHDEVSVLATLLS 245


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -3

Query: 342 FCFCGNLLWAFFKW-YAFVQSVVPDGWRV---TVAGGVIA-EDAFFFHGVGFLASGFRHF 178
           FC+ GN+L   + W +   + +    + +   T+A  V+A  ++  FH +  + S F HF
Sbjct: 167 FCYWGNILLLVYIWIFPESRRLFILSYSISYGTLAWSVVAWRNSLLFHSIDKITSLFIHF 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,147
Number of Sequences: 5004
Number of extensions: 44425
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)